Basic Information

Insect: Laspeyria flexula
Gene Symbol: -
Assembly: GCA_905147015.1
Location: LR989964.1:8404006-8410378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6e-06 0.00018 22.2 2.6 1 23 11 33 11 33 0.98

2 15 0.00012 0.008 17.0 0.6 1 23 48 70 48 70 0.98

3 15 3.7e-05 0.0025 18.6 3.1 1 23 85 107 85 107 0.98

4 15 2.6e-07 1.8e-05 25.4 1.5 1 23 122 144 122 144 0.99

5 15 0.00011 0.0079 17.0 2.8 1 23 150 172 150 172 0.98

6 15 8e-06 0.00055 20.6 2.1 1 23 199 221 199 221 0.99

7 15 0.026 1.8 9.6 1.8 1 23 228 250 228 250 0.98

8 15 4.3e-07 3e-05 24.6 2.3 1 23 256 278 256 278 0.99

9 15 0.03 2.1 9.4 1.8 1 23 285 307 285 307 0.98

10 15 1.8e-06 0.00012 22.7 1.5 1 23 313 335 313 335 0.99

11 15 0.00063 0.044 14.7 1.0 1 23 342 364 342 364 0.99

12 15 1.9e-06 0.00013 22.6 1.9 1 23 370 392 370 392 0.98

13 15 0.0014 0.099 13.6 0.3 1 20 398 417 398 420 0.93

14 15 2.8e-05 0.0019 19.0 1.4 2 23 427 448 426 448 0.96

15 15 2.1e-06 0.00015 22.4 1.3 1 23 454 477 454 477 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6e-06	0.00018	22.2	2.6	1	23	11	33	11	33	0.98
2	15	0.00012	0.008	17.0	0.6	1	23	48	70	48	70	0.98
3	15	3.7e-05	0.0025	18.6	3.1	1	23	85	107	85	107	0.98
4	15	2.6e-07	1.8e-05	25.4	1.5	1	23	122	144	122	144	0.99
5	15	0.00011	0.0079	17.0	2.8	1	23	150	172	150	172	0.98
6	15	8e-06	0.00055	20.6	2.1	1	23	199	221	199	221	0.99
7	15	0.026	1.8	9.6	1.8	1	23	228	250	228	250	0.98
8	15	4.3e-07	3e-05	24.6	2.3	1	23	256	278	256	278	0.99
9	15	0.03	2.1	9.4	1.8	1	23	285	307	285	307	0.98
10	15	1.8e-06	0.00012	22.7	1.5	1	23	313	335	313	335	0.99
11	15	0.00063	0.044	14.7	1.0	1	23	342	364	342	364	0.99
12	15	1.9e-06	0.00013	22.6	1.9	1	23	370	392	370	392	0.98
13	15	0.0014	0.099	13.6	0.3	1	20	398	417	398	420	0.93
14	15	2.8e-05	0.0019	19.0	1.4	2	23	427	448	426	448	0.96
15	15	2.1e-06	0.00015	22.4	1.3	1	23	454	477	454	477	0.97

Sequence Information

Coding Sequence: ATGCGCGCGCTGCTGGTGAAGGAGCGGCCGTACAAGTGTGAGCTCTGTCAGATGCGGTTCACCCAGAGCTCGAGCCTCAACCGACACAAGAAAATTCACACTGAGGAACACAGACGTGCGCTGCTGGCTAAGGAAAGGCCCTACCAGTGCGGCGTATGCTTTGTGAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGAGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGACGGCGGCGCTCGCTCGCCGCCCTACTGGACATTGACATGCGCTCGCATACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGACCGTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACATACACAAGCGGACACACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTACAAGGGCGGCCGTATCAGTGCACGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACACTCGCACGCACACGGGTGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGCCCATATGCTTGTGATATTTGTCAAAAAAGATTCGCTGTGAAGAGTTATGTAACTGCGCACAGATGGTCTCACGTGGCAGACAAGCCACTGAACTGCGACCGGTGTTCGATGACGTTCACGTCCAAGTCTCAGTTCGCGCTGCACATCCGCACTCACTCGTCCGGCTCTTGCTACGAGTGTAGTGTTTGTGGACGATCCTTCGTCAGGGACAGCTATTTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCTGCCAACAGCATGGGAACATCCATTGCCACCAACACCAACAACTCGAATAATGGTACTTTTGACTCTCCTGGCGTTTGTGACTTAAGCTTTGTACCAATGGTGAATCGTTATATGACATCGCAGGGAACGCAAGTGTCCATGCAAGATACAAGTAAAATGTCAGCGATGTCACCGCAATCTATTGCGTCTATTTCGTCGCCCCCTCCCTCGCATACTCCTACGCCCCAACCCCAGATGTCTGGTCAGTTGCATCTCGCTGACTGA
Protein Sequence: MRALLVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRRRRSLAALLDIDMRSHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCTECPAAFTCKPYLEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSSGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSMGTSIATNTNNSNNGTFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQLHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958832;
90% Identity: iTF_00041088;
80% Identity: -