Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0089 11 6.6 1.7 12 38 30 53 20 58 0.79

2 6 1.7e-05 0.02 15.3 0.8 19 41 71 90 65 92 0.92

3 6 0.29 3.6e+02 1.7 0.3 17 30 97 110 91 120 0.78

4 6 0.00028 0.34 11.4 3.6 14 40 122 145 110 148 0.83

5 6 0.00076 0.92 10.0 0.4 18 41 154 174 150 176 0.80

6 6 7.5 9.1e+03 -2.8 0.1 18 25 182 189 181 199 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0089	11	6.6	1.7	12	38	30	53	20	58	0.79
2	6	1.7e-05	0.02	15.3	0.8	19	41	71	90	65	92	0.92
3	6	0.29	3.6e+02	1.7	0.3	17	30	97	110	91	120	0.78
4	6	0.00028	0.34	11.4	3.6	14	40	122	145	110	148	0.83
5	6	0.00076	0.92	10.0	0.4	18	41	154	174	150	176	0.80
6	6	7.5	9.1e+03	-2.8	0.1	18	25	182	189	181	199	0.75

Coding Sequence: ATGATGCTGAACACCCTGAATTGTCTCAGCGCTGTAACCTATGTACTAAGGAGGGATTTACTCGTTAAACATACTAAAATCCACATGCCCAACGAAAAATATTTTGAGTGTGATGTTTGCGAAAAAAAGTTTCACAGGAGAGATAATTTGCGTTCCCACAAGCGTGTCCACGAAGTAGAACGTGATAAAGGTTCTTCTAGCACTTCTTTGTGCCTGTATTGTGGGCGTAGTTTCTCTAATTCATCAAATTTGATCGTACACATGCGCCGTCACACCGGAGAGAAGCCGTATAAATGTGATTTTTGTGACAAAGGATTTCCAAGATCTTCGGACTTACAGTGTCATAGGAGATCACACACTGGAGAAAAACCTTGTATATGTCGGGTATGCGGTAAAGGTTTCTCGCGTAGTAACAAGCTGTCTCGTCACATGCGAGTGCATACGGGCCAAAGACCATATAAGTGCACATATTGCGAAAAAGCATTCTCGCAGAGTAACGACCTAACTTTGCACATAAGACGACACACCGGCGATAGACCTTACATCTGTGAAGTATGCGGAGACAGATTCATTCAGGGTACAGCGTTACAAAATCACAGACGAGCTCACGGCCATTTTTCGTCACCACCTGTAGATCCATCACCTGAAGTCCAAACACTTACGTATACGATTCAAAGTATAAGTCATCTTAATCAATAA
Protein Sequence: MMLNTLNCLSAVTYVLRRDLLVKHTKIHMPNEKYFECDVCEKKFHRRDNLRSHKRVHEVERDKGSSSTSLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCDKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFSSPPVDPSPEVQTLTYTIQSISHLNQ

Sequence clustering based on sequence similarity using MMseqs2