Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.63 4.2e+03 -0.6 1.1 15 19 24 28 23 28 0.82

2 4 0.54 3.6e+03 -0.4 0.2 4 10 57 63 56 66 0.79

3 4 1e-06 0.0067 18.0 12.2 3 18 73 88 71 89 0.93

4 4 3e-07 0.002 19.6 12.1 1 18 101 118 101 119 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.63	4.2e+03	-0.6	1.1	15	19	24	28	23	28	0.82
2	4	0.54	3.6e+03	-0.4	0.2	4	10	57	63	56	66	0.79
3	4	1e-06	0.0067	18.0	12.2	3	18	73	88	71	89	0.93
4	4	3e-07	0.002	19.6	12.1	1	18	101	118	101	119	0.98

Coding Sequence: ATGTTTAGTCTGTTACGAGCATATCAAGCAAAGCGAGCGAAATCGTCTCAGAGTGAGAACAGTTGGAAGTGCCCAGCCTGCCGGGACATTAGTTTTCTCATACTGGAGGAGTATTTATGTTTCTGTGGGAAGACGAAGATGCCGGAGTGGAATCGCAGGGTCGTGGTTCACTCGTGCGGCGGGATCTGCGGTCGAAATCTGTCCAAGAACAATTGCACGCACAAATGTACCCTGCTCTGCCATCCCGGCTCATGTCCGCAGTGCGTGGCGATGGTGACCAAatacgaaaaagattTGTCGTGCGGCAAGCACACTTGTCAGAGAAAAAGCCATCAGGGAGAGTGCGGGCCTTGCGACGAGACTATGCGACAGACCTGTTTTTGTGGTAAGAAAACTCAGGAGATACCTTGCCGAGCTAATGTCACAGATATGTACATGTTCCTGTAA
Protein Sequence: MFSLLRAYQAKRAKSSQSENSWKCPACRDISFLILEEYLCFCGKTKMPEWNRRVVVHSCGGICGRNLSKNNCTHKCTLLCHPGSCPQCVAMVTKYEKDLSCGKHTCQRKSHQGECGPCDETMRQTCFCGKKTQEIPCRANVTDMYMFL

Sequence clustering based on sequence similarity using MMseqs2