Lpla021575.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- NFX1
- Assembly
- GCA_963971435.1
- Location
- OZ020540.1:12827631-12829460[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2 2.2e+04 -2.8 0.3 14 18 50 54 50 55 0.73 2 3 1 6.8e+03 -1.2 1.1 15 19 95 99 94 99 0.82 3 3 2.6e-09 1.7e-05 26.2 16.8 1 18 177 194 177 195 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTTCTCAATCATACCAAGAAGGGCGGAAGAGATAATAATGCAACACGTGTACAAAGAAAAAGTCTGAAGAATAAACACAAAATCAATAATGATGCGAGTCAAAGGGAGAGATTGACGGAGCAGTTGAACAGAGGAATATTAGAATGTTCAGTCTGTTACGAGCATATCAAGCAAAGCGAGTACGTTTGGTCCTGCAATAACTGTTACCATGTATTGCACCTAAAATGCATCAAAAAAATGGGCGAAATTGTCTCAGAGAGTGAAAACAGTTGGAAGTGCCCAGCCTGCCGGGACATTAGTTTTCTCATACCGGAGGAATATTTCTGTTTCTGTAGGAAGAGGAAGATGCCGGAGTGGAATCGAAGGGACGTACTTAGTTCACTCGTGCGGCGAGATCTGCGGTCGAAATCTGTCCAAGAACAATTGCACGCACAAATGTACCCTGCTCTGCCATCCCGGCTCCTGTCCGCAGTGCGTGGCGATAGTGACCAATGCGTTTCGATATGCGAAAAAGATCTGTCGTGCGGCAAGCACACTTGTCAGAGAAAATGCCATCAGGGAGAGTGCGGGCCTTGCGACGAGACCGTGCGACAGaCCTGTTTTTGTGGTAAGAAAACTCAGGAGGTACCTTGCCGAGCTAATGTCacagatatgtacatattCCTGTAA
- Protein Sequence
- MKVLNHTKKGGRDNNATRVQRKSLKNKHKINNDASQRERLTEQLNRGILECSVCYEHIKQSEYVWSCNNCYHVLHLKCIKKMGEIVSESENSWKCPACRDISFLIPEEYFCFCRKRKMPEWNRRDVLSSLVRRDLRSKSVQEQLHAQMYPALPSRLLSAVRGDSDQCVSICEKDLSCGKHTCQRKCHQGECGPCDETVRQTCFCGKKTQEVPCRANVTDMYIFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -