Lpla021562.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- Nfx1
- Assembly
- GCA_963971435.1
- Location
- OZ020540.1:12752633-12753431[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4 3.7e+04 -3.6 0.6 6 10 12 16 11 17 0.69 2 2 1.2e-09 8.2e-06 27.3 16.8 1 18 22 39 22 40 0.98
Sequence Information
- Coding Sequence
- ATGCTACTATGCAGTGCTCACCAACTGTTGCAGTGCGTTTCAATATGCGAAAAAGATCTGTCGTGCGGCAAGCACACTTGTCAGAGAAAATGCCATCAGGGAGAGTGCGGGCCTTGCGACGAGACCGTGCGACAgaCCTGTTTTTGTGGTAAGAAAACTCAGAAGGTACCTTGCCGAGCTAATGTAAacagatatgtacatattCCTGTAATAATATCTGCAACAAACCATTGGACTGCATTATTGCCAAAAAGTCTGCCATCTGGGGACATGCGAATCTTGCTCCTTTACGCCCGAGAGAATCACGACGTGCTTTTGCGGTCAAACGCCGTTGACGcagaagagagagagctgCTTGGATCCTGTGTCCATCTGCGACAAAATCTGTTCTAA
- Protein Sequence
- MLLCSAHQLLQCVSICEKDLSCGKHTCQRKCHQGECGPCDETVRQTCFCGKKTQKVPCRANVNRYVHIPVIISATNHWTALLPKSLPSGDMRILLLYARENHDVLLRSNAVDAEERELLGSCVHLRQNLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -