Lpla021938.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- NFX1
- Assembly
- GCA_963971435.1
- Location
- OZ020540.1:15617953-15621916[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.1 7.7e+03 -1.4 0.1 2 6 6 10 6 12 0.88 2 5 1.6 1.1e+04 -1.9 1.1 15 19 204 208 203 208 0.82 3 5 0.27 1.8e+03 0.6 0.3 4 10 237 243 236 244 0.93 4 5 2.7e-06 0.018 16.6 11.6 3 18 253 268 252 269 0.92 5 5 4.5e-09 3e-05 25.4 16.8 1 18 305 322 305 323 0.98
Sequence Information
- Coding Sequence
- ATGTCAACGGTATTAGGACGACATGATTGCGTGAAGGAAGCCACGGAGGCCAGTTGGACTTCGCCGCAGAAACTGACAATTGAAGATTTGCCGTTCGAGTCTCTTATTAATGAAGGAGTCAAAAAGTTGGCTGTATTGCAGAAAATGAAAAGAGGAGCGTGCAAAGTACTTGCATCCAAAATTTGTTGTACATCGAATGAAGGTTGCGATACGCTGGTCGATGCTTTGGGCTCCATTCTGTTATCGGGCATTGTAGGACCTACCGAAATAGAGCAGATAATTAAAGGGTATATGCATAAGAGAAACAATGAGAGGACAGCGAATCATAAAGAGAAGAACTTGGAGAATTGGAGAGATAGAGCGGAAGATAACGATGCAACACGTGTACAGGGAAAAAGTCTGAAGAATAAACACAAAATCGATAATGATGCGAGTCAAAGGGAGAGATTGACGGAGCAATTGAACAGAGGAATATTAGAATGTTCAGTCTGTTACGAGCATATCAAGCAAAGCGAGTACGTTTGGTCCTGCAATAACTGTTACCATGTATTGCACCTAAAATGCATCAAAAAATGGGTGAAATCGTCTCAGAGAGTGAACAGTTGGAAGTGCCCAGCCTGCCGGGACATTAGTTTTCTCATACCGGGGGAATATTTCTGTTTCTGTAGGAAGAGGAAGATGCCGGAGTGGAATCGCAGGGACGTGGTTCACTCGTGCGTCGAGATCTGCGGTCGAAATCTGTCCAAGAACAATTGCACGCACAAATGTATCCTGCTCTGCCATCCCGGCTCATGTCCGCAGTGCGTGGCGATGGTGACCAAGTATTGCGGCTGCGGAAGAATGTCGAAGATGCTGCTATGCAGCGCTCACCAACTGTTGCAGTGCGTTTCGATATGCGAAAAAGATTTGTCGTGCGGCAAGCACACTTGTCAGAGAAAATGCCATCAGGGAGAGTGCGGGCCTTGCGACGAGACCGTGCGACAGACCTATTTTTGTGGTAAGAAAACTCAGGAGGTACCTTGCCGAGCTAGTGTCacagatatgtacatattCCTGTAA
- Protein Sequence
- MSTVLGRHDCVKEATEASWTSPQKLTIEDLPFESLINEGVKKLAVLQKMKRGACKVLASKICCTSNEGCDTLVDALGSILLSGIVGPTEIEQIIKGYMHKRNNERTANHKEKNLENWRDRAEDNDATRVQGKSLKNKHKIDNDASQRERLTEQLNRGILECSVCYEHIKQSEYVWSCNNCYHVLHLKCIKKWVKSSQRVNSWKCPACRDISFLIPGEYFCFCRKRKMPEWNRRDVVHSCVEICGRNLSKNNCTHKCILLCHPGSCPQCVAMVTKYCGCGRMSKMLLCSAHQLLQCVSICEKDLSCGKHTCQRKCHQGECGPCDETVRQTYFCGKKTQEVPCRASVTDMYIFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -