Lpla033338.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020544.1:5010508-5013975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.039 15.9 1.1 1 23 118 141 118 141 0.93 2 12 0.0084 1.7 10.8 4.7 2 23 264 286 264 286 0.91 3 12 6.7 1.3e+03 1.7 7.6 3 23 430 451 429 451 0.95 4 12 0.46 91 5.3 2.9 1 23 502 525 502 525 0.93 5 12 8.7e-05 0.017 17.0 0.2 2 23 573 595 572 595 0.96 6 12 0.0013 0.26 13.3 0.1 3 23 619 640 617 640 0.93 7 12 0.0087 1.7 10.7 3.6 2 23 699 721 698 721 0.96 8 12 0.12 24 7.2 4.2 3 23 736 757 734 757 0.92 9 12 0.0003 0.06 15.3 0.1 2 23 804 826 804 826 0.94 10 12 0.22 43 6.4 0.8 1 23 908 930 908 930 0.98 11 12 0.017 3.5 9.8 1.1 3 23 945 966 944 966 0.94 12 12 0.0077 1.5 10.9 0.8 1 23 1039 1062 1039 1062 0.98
Sequence Information
- Coding Sequence
- ATGTCATCGAACATGACATCGTCGCACGAGCCGACAACGACGATGGCAGAGGCGGAGCTGGACAGTGACGGTTCGAGTTGCGGCGAGCGTGACACTTGGAAGCGCGTCCGCGGCGATTCCGCCGATCTCAGTGTCGGAACCAAAAAGCGTCGGAAGCAAGCCACACCGGTAAGATTATCGTCCAGCATAGCGACAGGCGCGCACGAGGATGCGTGCGAGGACGAGCGCGAGGACGAGGATAGCGAAGGTAAGCCGTCATCACGATCGCCGTTGCCGAGCAACGAGCATCACCACCATCAACACCACCATCATCATCAGCCGTCGCTGAAAGACGAGAATCTCAACAACGAGTTCCGTTGCCAGCACTGCGGCCGGTTCTTTGATAGCGACGAGACGCTCAATGTCCACATGGACGACGAGCACGGTGGAGCGAGTCAGGCGACACCGAGCGTCACCATCAAGGTAGAACCGGCGCAGCAGCTGGATCAGACTAATGATGGTCCCGTTAGCCTCCTAAGCGTCAAGAACTTCGCGACTACGTGGCTGACGTCCGGCAGTCAGCAACACGTGCAATCGCAGACGCAGATGCAATCGCAAAGCGAGGAATCGTGGTCGGGCAGTCCGGTCAATCAGATCGTCACAATGACCAATCACTTGCAGGCGCTCTCGGGTTTTCCCGGTACTCTCGCGCAGTATCTACCCTTACCGGGTTTTCCCCTACCCGATCCCCAGCAAGTCCCAAGATCCTCCCTCGGTCCGGTGCCAATCAAGATTTTTAACCCGGACGCGTACTGCGACATGTGCAACAAGGAGTTCtgcaacaaatattttctaaagacGCACAAGGCCAACAAACACGGGATTTATGTGGATTCGCCGGCACCGAGCACGGCTATGGACGCCGCTAATGTGTTCGGCGCCACGAACTTCCATGCAGGTAACACAAGCGTGAAGTTGGAACCACCAACGACGCCACCGCAGAAACGTTTCCGCAACGAAGAATCTACAATAAAGAAGCACAAGCAAAAAGACGAGTCATCGATGGATCAGCAATCGGACGGTCAGCAGATCCCTCTGTCGCAGAACGAGGAGGATCGGGAGACGTCGCGCGACAGTCCCGGCGGCATGGAAGCCCTTCTTAAGCAGGAATACGGAGTCGAACAGGAAGACGCCACTTTCATGCCGGCTCCTAGACACCTTTCGCCCCAGTCCATTCAGCAGGCGCGCGATTCCGGCTTCAGCGCCGATCTCCTGCGTCGTCTGGGCGTCATAAATCCCGACGCGTTCTGTGAAATCTGTTGCAAGGAATACTGTAACAAGTATTTCCTGCGCACGCATAAAATGAAACGGCATGGTATCGTTATACAAGACAACGAGAGATCACCTAGCAATCCTGGCACGGCCGCTGCCACATGGCATCAAGTGCAGACCAGTCCGCTGAACCTGATCGTGACCGACACTACTGCCGCGGGTTCGGAGTCCAACGATCGCATCGGCGAAGAGCACGAGTGCAAATCTTGCGGTATCCGCTTCCAAACGATCGGTCTATATCAGGCGCACTGTAGGAAAATACACGAGGGCGAAGAACATGGCACGCCAAAACAGGAATATGATCTAGAAAGTTCCGATCAGCGTACCGACTCGATCTCGGAGGATCTTCAAAAGCTGCAGACGATGATCATGCAATTGAACGGTTTGGATTCTGGCAAGGGATTGTCATGCGCCGTCTGCGGTAAAGAGTGCGACTCAAGGTCGGCTCTACGAGTTCATATGGCGACCGAACATGGTGTCGCCAATGATGAAGTTTCGTCGCCGCAGGAGACGTCACCCACCCAGATCATTTCGACTATTTTCTGCACTCTGTGCGAGAAAGATTACCCCAGCCAGGAAGCTCTGAGGAGACACATCAGCGAAGAACATCAACCCGTCGTATCCAGCGTTATTACGCTACCGACTCTTCCGCCGACGATAATCGCCTCTTCCGTCAGTTCGACACCAATTAATCAAACTCTGAGCAGTCAAACGACAACgatgacaacgacgacgacgacgacgacggagaaGAAGATGACGTCGCTGACGCCTACGTCCAGCTATTGCGAAATATGCAACAAGGAGCTGTGTAACAAGTACTTTATGAAGACGCACATGCAACGAATGCACGGCATCGAAATCGAGAATGGTGCGCAGATCGGCGGtgttatttgcaatatttgcaaCAAAGAGTTGTGCAGCAAATACTTTTTACGCGTTCACAAGCATAACACCCACGGGATTGTCGATGAGAACACGTCGTCGGCATCAACGTCGAATAAGCAAGAACCTTACGACGCTTCCGGCACAGAGGATTCGGCATTGAAGCAGGAACTGGGCGATCTtagtcataaatattttattcacttCACCGAGGTGTGTCCGATCTGCAGCCGAAGGTTTCGCAGCATCAAATGGCTGAAGGCCCATCTAATGGGTGATCATGGCAAAGTTGGAATTGACAAATGGCGCGAAATGGAACAGCAATATCAAGAGACACCCAGGACCAGTGGCAAAAGTGTCGTACCAGTACCTCCAATAAAAAACATCCAGCAAACGTCGAATCTGAAGATTCCCAATGGTCTCGAGATTGGTCAGCAAGTCAAGTCGACCGATTGCACTAATCTAGGAAATCAGGTGTTGTCAAATCTCTTTGGCTCTTTGTCCGAGGAACATCAGCtgaaaaattatcattgcGCCTACTGCAACTTTGCGACGTCCGTGCTGCCCTTACTCTTCCTTCACGAGCGATCACACGTAAGTTTTCAGGAAAACGTCGAAGGTGACCGGCCACTGCTTTGCCCGATCTGCTCGCAGGACTTCCATCAACCAGATCTACTTCATCAGCACCTACTCGCTAAGCATCAAATCCCTACTTTAATATCGCAGTTCCAGCATCCTCTTCTGAACAACTTGAGACCGGATGCCGATGTCAAGGCGAACGACGTTAAAAACAAAACCGATCAAGATGTGAAGGACAACAGAGCAGGATGCAGTCCGCAGATCGATCGAAATATTTCCGAGCCCGCGAAAAATCAACGGCAGAATGAAACCGCCGTACAGGTGACTGCTCACGGCGCATACAAGTGCGCTCAGTGCGGCTACGCGACGACGAATCTAAATCGGATCAAGAAACACGTGCGGAAAGATCACAAAATGATCGGCGATCCGACGGAGAGCGTGATCGCCGAACTCAGTAAGACCCTGAAAGACGTGGCGAATAAGCAGAAGGTACCGGCCTGTTATGCGATGCCGCAGGACATGAACTCGAATCCCGATAAAACCATCATGCAACCGTTTCTGATCGAGGAGCAGGATCTGATGCAGACCGAGTCCAGCTCGGCGACGAGATTCGCGCCAGCTCTGGTCTATTTGCCGGTCAAATCCAGAATCAGCAACGCCTTGACTGCTTCCTTCACTCTCACCCCCGCCTGA
- Protein Sequence
- MSSNMTSSHEPTTTMAEAELDSDGSSCGERDTWKRVRGDSADLSVGTKKRRKQATPVRLSSSIATGAHEDACEDEREDEDSEGKPSSRSPLPSNEHHHHQHHHHHQPSLKDENLNNEFRCQHCGRFFDSDETLNVHMDDEHGGASQATPSVTIKVEPAQQLDQTNDGPVSLLSVKNFATTWLTSGSQQHVQSQTQMQSQSEESWSGSPVNQIVTMTNHLQALSGFPGTLAQYLPLPGFPLPDPQQVPRSSLGPVPIKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPSTAMDAANVFGATNFHAGNTSVKLEPPTTPPQKRFRNEESTIKKHKQKDESSMDQQSDGQQIPLSQNEEDRETSRDSPGGMEALLKQEYGVEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVIQDNERSPSNPGTAAATWHQVQTSPLNLIVTDTTAAGSESNDRIGEEHECKSCGIRFQTIGLYQAHCRKIHEGEEHGTPKQEYDLESSDQRTDSISEDLQKLQTMIMQLNGLDSGKGLSCAVCGKECDSRSALRVHMATEHGVANDEVSSPQETSPTQIISTIFCTLCEKDYPSQEALRRHISEEHQPVVSSVITLPTLPPTIIASSVSSTPINQTLSSQTTTMTTTTTTTTEKKMTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSASTSNKQEPYDASGTEDSALKQELGDLSHKYFIHFTEVCPICSRRFRSIKWLKAHLMGDHGKVGIDKWREMEQQYQETPRTSGKSVVPVPPIKNIQQTSNLKIPNGLEIGQQVKSTDCTNLGNQVLSNLFGSLSEEHQLKNYHCAYCNFATSVLPLLFLHERSHVSFQENVEGDRPLLCPICSQDFHQPDLLHQHLLAKHQIPTLISQFQHPLLNNLRPDADVKANDVKNKTDQDVKDNRAGCSPQIDRNISEPAKNQRQNETAVQVTAHGAYKCAQCGYATTNLNRIKKHVRKDHKMIGDPTESVIAELSKTLKDVANKQKVPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQTESSSATRFAPALVYLPVKSRISNALTASFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729606;
- 90% Identity
- iTF_00868350;
- 80% Identity
- -