Basic Information

Insect: Lasius platythorax
Gene Symbol: -
Assembly: GCA_963971435.1
Location: OZ020538.1:12357203-12359839[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0057 1.1 11.3 2.8 2 23 223 244 222 244 0.95

2 11 0.00038 0.077 15.0 3.7 3 23 249 270 248 270 0.95

3 11 5.4e-05 0.011 17.7 1.1 3 23 281 301 279 301 0.95

4 11 0.054 11 8.3 1.5 1 23 335 357 335 357 0.98

5 11 0.048 9.6 8.4 2.4 1 23 360 383 360 383 0.91

6 11 0.029 5.7 9.1 2.1 1 22 399 420 399 423 0.90

7 11 0.013 2.7 10.2 0.2 1 23 437 460 437 460 0.97

8 11 0.29 58 5.9 2.0 1 23 466 490 466 490 0.96

9 11 0.00057 0.11 14.5 0.3 2 23 497 519 496 519 0.91

10 11 1.7e-07 3.4e-05 25.6 0.9 1 23 525 547 525 547 0.97

11 11 0.00021 0.041 15.9 7.7 1 23 553 576 553 576 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0057	1.1	11.3	2.8	2	23	223	244	222	244	0.95
2	11	0.00038	0.077	15.0	3.7	3	23	249	270	248	270	0.95
3	11	5.4e-05	0.011	17.7	1.1	3	23	281	301	279	301	0.95
4	11	0.054	11	8.3	1.5	1	23	335	357	335	357	0.98
5	11	0.048	9.6	8.4	2.4	1	23	360	383	360	383	0.91
6	11	0.029	5.7	9.1	2.1	1	22	399	420	399	423	0.90
7	11	0.013	2.7	10.2	0.2	1	23	437	460	437	460	0.97
8	11	0.29	58	5.9	2.0	1	23	466	490	466	490	0.96
9	11	0.00057	0.11	14.5	0.3	2	23	497	519	496	519	0.91
10	11	1.7e-07	3.4e-05	25.6	0.9	1	23	525	547	525	547	0.97
11	11	0.00021	0.041	15.9	7.7	1	23	553	576	553	576	0.97

Sequence Information

Coding Sequence: ATGACGCTACGTTTGTTTGATAATCAGGATTATTCGACTTTAGATGCTATACCAAACATATGTATGGAGAATTGCGAAATAGGGAATTATGACTATTTGGAAAAATGCATCAGTAATCTCGAAAATAAAGATTCTGAGGTCAGTTTACCAGCCACACCTACGAGTACCACAGACATTGGTTTACAGGATAACTTGGATGATGTTAATTTGAATAACattgattttcattttatgaaatatgaaaatttactCTTGCAAAATGCTGaagaatctaaaaattatataaagagcaAAGAGATAAAGCAAGAAAAGTCATCAGATGTTAATATTTCATACtcaattcaaaattttgacacAGTGAATCTGGACTGCAACACCTTttcatttaattcaaataaggaatcagataatataataactattaaCAAGGATGAATCTTATACATTTAACGAAGATCTAACAATTCAATGTTTAGGAAGAAAGCCAATAATAgggaattataattattccacCAAACTttacatagaaaataataatggaaatgtACCTCTTAATGTAAATGAAGATAGCAGTTGTATAAATCAAAATGTCACATCAAAATTGAAACATGGAATAAGGATTGACAATCTTCCCCTGGAGCCATCAGATGGAAATGAACAACTTCAAAAGTGCGAACAGTGTCTCATGACATTTAGATATAAAAGGCACTTAGATCGTCACTTGGAAGGTcatcagaaaaataattgctcTCATTGTGATGAAAAATTTGCTAGACGGAAGCATCTAGAGGTTCACTTATTTCGTGCACATAGAGAAAGAGTGGTCAGGCATGCTCATTTATGTGATGTGTGTCCCAAAAGTTTTCCTAAACGTGCTCTCTTGAATCGTCATCGAGCAAAACATAGCTATCAAAATGGTAAAGTCTGTTCGGAATGCGGAGAAAtgataaatgcaaatatagataaaaaagagCACGAAGAAAATCACTGTAAAAAGAGACAATTTAAATGCCAACAATGTTTGCAAACATTTAGTATTGAACAGACATATTTGTCCCATATTCAGAatcacaataattataaatgttcaaACTGTAATGTCAGTTTCGCGTCAAAAAAGAAGGCGCACGAGCATTTTAAGGCAGTTCATGTACCAAAGTTATGCAAGTCagaatcgataaataatagtgGTCCATATTTTTGTGCCAATTGCAGACATACATTTATCAAGAGAGATGATTATTTTCGGCACTTGGAATCTGCATTACATCTAAGTAAAATCAACAGGGACACACCTATACGAGCTATATTTTCATGTGCAATCtgcttgaaaaaattaatcacgCAAAGAGCCCTGGATCAACATGTCAGGCGTATTCACAAGGGCGAAAAGCGATtcgtgtgtaatatatatggaTGTACGTTTCAATGTGCCACGAGGACAGATCTTGATAGACATAAACAACTGCACGTAGAAGAGCGAAACATCGTGTGCGAGCATTGCGGCAAGACGTTTACCAGCGTCAGTATTCTTAAGGATCATGTACTTTATATTCACAGTAAAGAGCGGCAATTTATTTGCGAAGTGTGCGGCAAAGCGTTTAAGAGAAACAGTTTACTCAAAAGGCATAAATTGTCACACGAGCAACATCGGCCGTTTGTCTGTATGCAGTGCAGCACCGCGTTTAAACGTTCGCATCATCTCACTCGTCACATGGAAACCTGTCACAGAATTACattggaaaaaagaaaaaagGTGATGAAGCTCATGAAAACAGAAGATGGTCATCTTGTGCCAATGCCGGAAAAACCAAACAAATTAGATCGTAATAAAGTGAAAAGCGAAAAAGAGTGCGAATCAATTGTAAAGAACAAGGAGAAAGATAGCTCAATTACAAATATAGATAaacaagttataaatattgattcgcGGCTGCAAATACAGCCACTGTCAAACTCTGAGGGAAACTCTGAATGCTCAAGTCTGTCGTTAGAACTTACGAATTTATCTGTTATTGATTCTATTCCGCAGGTTCTTTCATTAGTAGATGTAAATACGGGACAAGTGCTTACTGTAGAAGTCGCCAATCCGGAATTTTTACCTACCGATGAGCTCGCTGATCAATTGGGAACAAATTGCAgtgaaatattgaatttatcaGTTTACCAAGATATAGAATTTCACAATAGTCTCTTAAATGCCGATCAAACGTATTGTACAAACATATCGGAggataatacaaattattcgGAAGTAtcattagaaaatattgaaggTTCATTCTCGCTTATAAATAGTAAGATGGAAACAATAGAAAGTTATTTAACAAACGAATTTTCGCcgtttcttaatatttaa
Protein Sequence: MTLRLFDNQDYSTLDAIPNICMENCEIGNYDYLEKCISNLENKDSEVSLPATPTSTTDIGLQDNLDDVNLNNIDFHFMKYENLLLQNAEESKNYIKSKEIKQEKSSDVNISYSIQNFDTVNLDCNTFSFNSNKESDNIITINKDESYTFNEDLTIQCLGRKPIIGNYNYSTKLYIENNNGNVPLNVNEDSSCINQNVTSKLKHGIRIDNLPLEPSDGNEQLQKCEQCLMTFRYKRHLDRHLEGHQKNNCSHCDEKFARRKHLEVHLFRAHRERVVRHAHLCDVCPKSFPKRALLNRHRAKHSYQNGKVCSECGEMINANIDKKEHEENHCKKRQFKCQQCLQTFSIEQTYLSHIQNHNNYKCSNCNVSFASKKKAHEHFKAVHVPKLCKSESINNSGPYFCANCRHTFIKRDDYFRHLESALHLSKINRDTPIRAIFSCAICLKKLITQRALDQHVRRIHKGEKRFVCNIYGCTFQCATRTDLDRHKQLHVEERNIVCEHCGKTFTSVSILKDHVLYIHSKERQFICEVCGKAFKRNSLLKRHKLSHEQHRPFVCMQCSTAFKRSHHLTRHMETCHRITLEKRKKVMKLMKTEDGHLVPMPEKPNKLDRNKVKSEKECESIVKNKEKDSSITNIDKQVINIDSRLQIQPLSNSEGNSECSSLSLELTNLSVIDSIPQVLSLVDVNTGQVLTVEVANPEFLPTDELADQLGTNCSEILNLSVYQDIEFHNSLLNADQTYCTNISEDNTNYSEVSLENIEGSFSLINSKMETIESYLTNEFSPFLNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00265231;
90% Identity: iTF_00867704;
80% Identity: -