Basic Information

Insect: Lasius platythorax
Gene Symbol: mecom-b
Assembly: GCA_963971435.1
Location: OZ020545.1:12096430-12114677[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.01 2.1 10.5 0.7 2 23 131 153 130 153 0.95

2 9 0.58 1.2e+02 5.0 0.1 1 23 160 183 160 183 0.93

3 9 1.2e-05 0.0024 19.7 1.1 1 23 189 216 189 217 0.93

4 9 5e-06 0.00099 21.0 2.6 1 23 223 245 223 245 0.95

5 9 3e-05 0.0061 18.5 5.0 1 23 251 273 251 273 0.99

6 9 0.0006 0.12 14.4 0.7 2 21 281 300 280 301 0.95

7 9 7.1e-09 1.4e-06 29.9 1.2 1 23 660 682 660 682 0.99

8 9 3.7e-07 7.4e-05 24.5 1.7 1 23 688 711 688 711 0.97

9 9 1.1e-05 0.0021 19.9 3.4 1 23 717 739 717 739 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.01	2.1	10.5	0.7	2	23	131	153	130	153	0.95
2	9	0.58	1.2e+02	5.0	0.1	1	23	160	183	160	183	0.93
3	9	1.2e-05	0.0024	19.7	1.1	1	23	189	216	189	217	0.93
4	9	5e-06	0.00099	21.0	2.6	1	23	223	245	223	245	0.95
5	9	3e-05	0.0061	18.5	5.0	1	23	251	273	251	273	0.99
6	9	0.0006	0.12	14.4	0.7	2	21	281	300	280	301	0.95
7	9	7.1e-09	1.4e-06	29.9	1.2	1	23	660	682	660	682	0.99
8	9	3.7e-07	7.4e-05	24.5	1.7	1	23	688	711	688	711	0.97
9	9	1.1e-05	0.0021	19.9	3.4	1	23	717	739	717	739	0.99

Sequence Information

Coding Sequence: ATGTTCGTAGCTTCCCGTTGGCAAATGGGGGTGTCCAGGAACGGCGCCGACGCATCGGGGGTGGAACGCATGATTTGCATAGCGGGCAGCGGAGTAAGAGGCTGGCTGGACGCATCTCACGAGACGAGCAATTGGCTGAAATACATTCGAAGTACTGCTAGTCCGCACGCGGTGAACATGCGCCACGTGCTCATCGGCGGTCagATGGTGTATGAAACCGTTCGCGACATCATAACGGGCGAAGAGCTTCTTCTGGGTCTTCGGGAGCCGCTTCAGCTGCAGGACATGCTGGGTGAGAATACAACCGAGGACAGAAGCGATCGAGAGACTGCTTCGCAGCACAGTGGAACCGTCGACGAGGACAAGGAGGACGAGGAGGAGGGAGAGACGAGATGCACCGTCTGTGACAAACCGTTCCAAGATATTGAACTATTGGATAGCCACCTGGTGACTTGTCATAGATACCCAGCGGAGCAGCACCGTTGCGACAGCTGTCCTCGTGCTTACGCCTGGCGACCGCTTCTGGTACGTCATCGCGCTATCGTTCACGGTGATCTCAGAAATTATCCCTGCGAGAATTGTCCGAAGTCGAACATCCGGCAGGTCTTCACGGACCCGTCGAATCTACAGCGCCATATCAGAACGCATCACGTGGGTGCCAGGAGCCACGCTTGCACGGAGTGCGGCAAGACCTTCGCGACCAGTTCAGGGCTAAAGCAGCACACTCACATCCACAGCAGCGTAAAGCCCTTTCAGTGCGAGGTCTGTTTCAAGGCGTACACGCAGTTCTCTAATTTATGCCGGCACAAGCGCATGCACGCCGACTGTCGCATGCAGATCAAATGCGTTAAATGCGGACAGTCCTTCAGCACAGTAACGTCGTTATCGAAGCATAAGCGATTTTGCGACTCCACGACTCCGACCGGTCCGCCTGGAACTATGCCGCAGTTACCGACGCCAACGACAAGTCCCTTCCTGGTGTATCCACGACCTTCCGTGAGCCTGCCAGGCGGTCTGCCTTTCTACCCGCCTAGTTTGATAGGTCCATATCCGGGAATCTTTCCGAGCGCTCCAAATTTCCTGAATACGCCTCTGCTCTTCCCGCCGAAGATCGAGGAAACTGAGAAAAGGAGCGAGAGCCCCAAGAAGGAACGATTCACTCCACCGAGGGTGCTGCCGCAACACAACAAGGTGTCCCCTTCCACGGCAGAGGAGGCCACCTCTACCTTCAGGCCGTCTCCGGCTAGACCTCCGGTTCAACCGACTCCGGAGAGCGATGACGATCTGTCCAAGAGGAGAGAAGCGGCCAGAAACAACGAGCGGAAGATGGAAAGCGAGAGCGTGTCGAACGTCTCGAAGGAAGAGACGACGGAACAGCCGTTGGATTTAAGGGTGCAGACCAGGAAGCAGGACGCCACTATGAAAGCCGCGAACAGGAAGAGTCGCACACCATCGCCGGCATCGGTGCAGATGGAGGAGACACCCGCACCTCCTGATCCCCCGAAACCGGAAGAGGACCCAGTTGCTCCGCCATCGATGGAACTCGAATCCAAGGATATTCCCAACAGTCCTCAGCAACTGAGGACCAGTCTACCGACCGAACAACCGCCGACCAATACGCCGCCGCATATGGCTTATCCCAGACCGATACATCCAATGTTTCTCGAGACGATGTATCGCAGTCCACCGGGGAGCTTTCCGGGGTTCCCCGGCGCGCCGCCACCTCCCGGCGCAGCCGCCCCGGAATCCAGACTGATACCCCCGCTCCCCTTCGGTCCACCGCGCGGGCTTCCTTTTTTAGGCTCGCTTATGAACGGGCTCAGCGGCGCGAGGCCAGGAAGTGGCTTCGATTTGCTCGCCCGGCCGCCGCTGAGCGCGTTCCCACCCGGCGTGAAACCGTTTCAGGAGGCGGTGTTGCCCCATCACCACCATCATCATCACCATCATCACCACGTCCACGGCAAGATGAAGGATCGGTACTCCTGTAAGTTCTGCGGCAAGGTGTTTCCCCGCTCGGCCAATCTCACGAGGCATCTGAGGACGCACACCGGCGAGCAGCCGTACAAGTGCAAGTATTGCGAGCGATCCTTCAGCATCTCGAGCAACCTGCAGCGACACGTCCGGAACATCCACGACAAGCAACGGCCGTTCAAGTGTCCGCTCTGCGAGAGGTGTTTCGGTCAGCAGACGAATCTGGATCGACATCTTAAGAAGCACGAGGCCGACGACGGTAGCGGCGTAGTCTCGGTCGCTGACTCGCCCGGAAGTAGCAACGAGAACGAGCGGGAGGACACGTACTTCGACGAGATTAGGTCTTTCATGGGCAAGGTCACCTACAGCGGCGAAGGTGGATACGGGCTGCCCCATCATCCGGCCTATATCCCCAATCGGCTGCGCGAGATGAACGAGAGTAAGATGGAGGTCGAGtacgacgaggacgaggatAGCGAAGAGGGCGCGTCTCCGTTGGAGGAGACGGACGGATTGTCGCCGATCGAGGCTAAGAAGTCGCCGTCGCCCTCGCAGTACGATCTGAAGCTTAGGGAGAAGCAGGAACTGCTCAATAATAACACCGCGGAGCCGGTGATCGAGATCTCGACATAG
Protein Sequence: MFVASRWQMGVSRNGADASGVERMICIAGSGVRGWLDASHETSNWLKYIRSTASPHAVNMRHVLIGGQMVYETVRDIITGEELLLGLREPLQLQDMLGENTTEDRSDRETASQHSGTVDEDKEDEEEGETRCTVCDKPFQDIELLDSHLVTCHRYPAEQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSNIRQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTGPPGTMPQLPTPTTSPFLVYPRPSVSLPGGLPFYPPSLIGPYPGIFPSAPNFLNTPLLFPPKIEETEKRSESPKKERFTPPRVLPQHNKVSPSTAEEATSTFRPSPARPPVQPTPESDDDLSKRREAARNNERKMESESVSNVSKEETTEQPLDLRVQTRKQDATMKAANRKSRTPSPASVQMEETPAPPDPPKPEEDPVAPPSMELESKDIPNSPQQLRTSLPTEQPPTNTPPHMAYPRPIHPMFLETMYRSPPGSFPGFPGAPPPPGAAAPESRLIPPLPFGPPRGLPFLGSLMNGLSGARPGSGFDLLARPPLSAFPPGVKPFQEAVLPHHHHHHHHHHHVHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYSGEGGYGLPHHPAYIPNRLREMNESKMEVEYDEDEDSEEGASPLEETDGLSPIEAKKSPSPSQYDLKLREKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01407591;
90% Identity: iTF_00126171;
80% Identity: -