Basic Information

Insect: Lasius platythorax
Gene Symbol: -
Assembly: GCA_963971435.1
Location: OZ020549.1:1013764-1017575[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.016 3.2 9.9 2.7 1 23 45 67 45 67 0.99

2 13 0.00015 0.031 16.3 3.0 1 23 241 263 241 263 0.99

3 13 2.3e-07 4.7e-05 25.1 0.4 1 23 269 291 269 291 0.98

4 13 0.0058 1.2 11.3 1.9 1 23 316 339 316 339 0.96

5 13 0.13 27 7.0 0.6 1 23 345 369 345 369 0.95

6 13 7.9e-07 0.00016 23.5 0.8 1 23 374 396 374 396 0.98

7 13 0.0024 0.49 12.5 3.8 1 23 408 432 408 432 0.92

8 13 0.0043 0.86 11.7 2.6 1 23 434 456 434 456 0.97

9 13 7.8e-06 0.0016 20.3 0.2 1 23 462 484 462 484 0.96

10 13 7e-06 0.0014 20.5 1.4 1 23 490 512 490 512 0.98

11 13 0.012 2.4 10.3 0.3 5 23 527 545 518 545 0.79

12 13 0.028 5.7 9.1 7.3 1 23 551 574 551 574 0.91

13 13 0.0018 0.36 12.9 1.8 2 19 577 594 576 597 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.016	3.2	9.9	2.7	1	23	45	67	45	67	0.99
2	13	0.00015	0.031	16.3	3.0	1	23	241	263	241	263	0.99
3	13	2.3e-07	4.7e-05	25.1	0.4	1	23	269	291	269	291	0.98
4	13	0.0058	1.2	11.3	1.9	1	23	316	339	316	339	0.96
5	13	0.13	27	7.0	0.6	1	23	345	369	345	369	0.95
6	13	7.9e-07	0.00016	23.5	0.8	1	23	374	396	374	396	0.98
7	13	0.0024	0.49	12.5	3.8	1	23	408	432	408	432	0.92
8	13	0.0043	0.86	11.7	2.6	1	23	434	456	434	456	0.97
9	13	7.8e-06	0.0016	20.3	0.2	1	23	462	484	462	484	0.96
10	13	7e-06	0.0014	20.5	1.4	1	23	490	512	490	512	0.98
11	13	0.012	2.4	10.3	0.3	5	23	527	545	518	545	0.79
12	13	0.028	5.7	9.1	7.3	1	23	551	574	551	574	0.91
13	13	0.0018	0.36	12.9	1.8	2	19	577	594	576	597	0.94

Sequence Information

Coding Sequence: ATGGCTCATTCTATCCTCGACGCTTTGACAGATGTCTCACTAGACGGCTCCTCCGTGCAATCCTTATTGGAGTCGCAGACCTTGATAGCCGAAGTCGAGCAGTCAGCGATCGATCAGGATGAGGAAGATATATTCCAATGCGGCAAGTGCAAGAGTCAGTTTACGTCACTGCAGATGTTTGTGCTCCACAAGAGAACGCACCAAAAGACGCAGGAGCAGACAGTGGACTTGACTCAATTCCTGACAAACGATGAAAGTCAGGTGATGCATGTGGAAGATGCAACTCCGGATGAATCGCAGTACAATTCGCAAGAAACCTTTCAGCTTGGAGAACCTATTATCCTGGAAGAAGCAGATATGCTATTTAGTGTGGACCAAGAGGCTGCCAATTACTTCACGACAGATTCCACATTCAGTGTGCCAATCATCTTGAGCACAGAACATCTAGATTCTTTTGTCCAGGCGACGGGGGAGGATTCGAACGAGGTGCCGACAATACAACTGCAAAACGACGTCAGCTCGCACGAAGACGCCTCGAGCCAGTCCGAACATCCTAGCTCTTCGTTGATGGACAACGAGCCATCGGTGGCGGACGAGCCGCCCGTAGCGGACGAACCACCCTTGGATGGCAATGAACCTTCCTTCGAGAACAACGAAATATCCTTTCAAGATAATTTGTCTGGTGAATTAGAAAACGATAGTCAAACACAGAACTTAAAGTATAAGTGTGGCTATTGCAACAAGCAATTTGCGAAGAAATTCTATTGGCAGCAGCACGAACGTTCTCATACTGGAGAGAAGCCTTATCAATGTGTAGTGTGTGGTCGTGCATTTGCACAAAAGTCAAATGTGAAGAAACATATGTCATCGCACAAAGTCTGGCCTGGCACTGCCATTCACTCGTTACCACCAGAGGCGCCTCCAGACGGAAGTATCGACCGCACGTATCACTGCCAATTCTGCAAGGAAACATTCGACTCATACAAGGCTCTGAAAGGCCATCTCATCGTCTCGCATCTAGCGCTGAAGGTGTACAAATGTGTGCAGAGCAGCTGCAGCATGATGTTCTCGGAACTAGAGGAGTTCCTGGAGCATACACGTAGTCATAAGTGCTCGGAGTACCGGTGTCACGTATGCGGCGAGGTGTTCAGTACCCTCTCGGATCTCGGTCGCCATCAGTACGTCCACTCCGTCCAGAAACAAAAGACTACGGAGAAGTACTACTGCTGCTCGGTCTGCAAATCATCCTTCTCGAATCTCGAGGCGCTGCAACACCATCAAGAAACTACTACGCACGACTATGCGTGCCTGCACTGCGGCAAGAGCTTTCTCATCGAGAGATTTTTACGTCGTCATCTCAAAACCCACTCGGCGTCGGCGAGATTCGCCTGCGAGGATTGCGGCAAGGCTTTCAAAACCGAGCAGTATCTGGCCAATCATAAGTTGATACACAGCGAGGAGACACCCTTTACCTGTCCGCATTGCCCGGCCAGATTCAAGCGGAAAGATCGGTTGGGACGGCACATGCTGATCCACGACCTGACGAAGAGGCTCAAATGCCCATTTCGCGGCTACCTGGGCTGCATGAGCGAGTTCTCGCGGCCGGATAAGCTCAAACGGCACCTGTTGACGCACAGCAACGTCAAACGATTCAGCTGCAGCCATTGTAACCGCAACTTTCACCGGGCGCAGGCCCTCAAGCATCACGAAACGAACAAGCACAGCCTCAAGTGCGATATTTGCTCTCACGCTTTTAAGACTAAAGAGCAATTGATCACCCACAATTGCGAGCAATCGAGCGAGACTAAGAAGCACACGAGCTCGCAGCTACCAAAAAAAGCGTCCGGATCGTTTAAGCCAAGGAAACCAACTCCAAAGAGACAAACCTTATCAAAGACTGCAATTCCACTTATCGATAAAGAGAAATTGGAAAAACTTAAGGCCGAcgaaatagaaagaaaaATCGCCTCTGAAACATTCAAGTCTGCCGATTTCGATGAAGAGTTTTGTAAGAAAACGGGAAACATTCCTCCCGTCTCAAAGGCAGTCGAATCAACCGGCAGCGAATTAAACGAGCGATCCGACTCGCCGGATATGATCTTCGGGAATGATTTTAAGCGCGACATAGAGTTCTACTCCAACGCGAACGAGTAG
Protein Sequence: MAHSILDALTDVSLDGSSVQSLLESQTLIAEVEQSAIDQDEEDIFQCGKCKSQFTSLQMFVLHKRTHQKTQEQTVDLTQFLTNDESQVMHVEDATPDESQYNSQETFQLGEPIILEEADMLFSVDQEAANYFTTDSTFSVPIILSTEHLDSFVQATGEDSNEVPTIQLQNDVSSHEDASSQSEHPSSSLMDNEPSVADEPPVADEPPLDGNEPSFENNEISFQDNLSGELENDSQTQNLKYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFSELEEFLEHTRSHKCSEYRCHVCGEVFSTLSDLGRHQYVHSVQKQKTTEKYYCCSVCKSSFSNLEALQHHQETTTHDYACLHCGKSFLIERFLRRHLKTHSASARFACEDCGKAFKTEQYLANHKLIHSEETPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRGYLGCMSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHETNKHSLKCDICSHAFKTKEQLITHNCEQSSETKKHTSSQLPKKASGSFKPRKPTPKRQTLSKTAIPLIDKEKLEKLKADEIERKIASETFKSADFDEEFCKKTGNIPPVSKAVESTGSELNERSDSPDMIFGNDFKRDIEFYSNANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110004;
90% Identity: iTF_00729529;
80% Identity: iTF_00868288;