Basic Information

Insect: Lasius platythorax
Gene Symbol: -
Assembly: GCA_963971435.1
Location: OZ020535.1:3764982-3768247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.5 9e+02 2.2 1.3 1 20 358 377 358 381 0.84

2 10 0.017 3.4 9.8 3.7 1 23 388 410 388 410 0.97

3 10 0.0046 0.91 11.6 4.9 1 21 416 436 416 438 0.95

4 10 9.1e-05 0.018 17.0 6.4 1 23 444 466 444 466 0.98

5 10 1.2e-05 0.0024 19.7 3.6 1 23 470 492 470 492 0.97

6 10 4.1e-07 8.1e-05 24.4 1.6 1 23 503 525 503 525 0.98

7 10 9.7e-08 1.9e-05 26.3 1.8 1 23 531 553 531 553 0.99

8 10 2.1e-06 0.00041 22.1 0.3 1 23 559 581 559 581 0.95

9 10 1.2e-06 0.00024 22.9 0.6 1 23 587 609 587 609 0.96

10 10 2.7e-06 0.00054 21.8 0.6 1 23 615 637 615 637 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.5	9e+02	2.2	1.3	1	20	358	377	358	381	0.84
2	10	0.017	3.4	9.8	3.7	1	23	388	410	388	410	0.97
3	10	0.0046	0.91	11.6	4.9	1	21	416	436	416	438	0.95
4	10	9.1e-05	0.018	17.0	6.4	1	23	444	466	444	466	0.98
5	10	1.2e-05	0.0024	19.7	3.6	1	23	470	492	470	492	0.97
6	10	4.1e-07	8.1e-05	24.4	1.6	1	23	503	525	503	525	0.98
7	10	9.7e-08	1.9e-05	26.3	1.8	1	23	531	553	531	553	0.99
8	10	2.1e-06	0.00041	22.1	0.3	1	23	559	581	559	581	0.95
9	10	1.2e-06	0.00024	22.9	0.6	1	23	587	609	587	609	0.96
10	10	2.7e-06	0.00054	21.8	0.6	1	23	615	637	615	637	0.99

Sequence Information

Coding Sequence: ATGCCGCGTCAAATTATGGGCTCGAATATCAGTTGCATCAATAACAATAAATGCCGTGCGTGTATGAAGGAAGGCGACAAAATGTTGCCGATGTACGATGACAAAAGTACAAGCAAGATTAATCTACCATATAAACTCGCGGAGCTCACGTCCATTCAGattGACAAGTTTGATGGACTGCCCAACATGCTCTGTTCCAAGTGTGCTTATCGAACTTATGCTTTCTATAACTTCAGGCTAAAAGTACAAGAGTCGGACAAGAAATTTAGGATGATACTTGAAAATCAAATGATCACTACCAAGgaaGAAGAATTAAGTGATAAGGACAATGAAGATAGCATTGTAGAAACAGATGAATCCTTAGAATTGAATGTATCAAATGATAGATCTATACACAATGCTGATTCTTTAGAGAATATAAAGATTGAAATAGACGACACGATTAAGAATGAGCAACAATACGAGTCTCATATACCTCAGTTGTTTGAAAATGACAGAGAcaacaaagaaaataatgtgcAGTTGAATGAACTCCTTCATAATATTCTAGGAATTAATGAAAATCAAATGGATGCTCATTTTGTGAAAACCGATATACCCGaggaaatttcgaaaatactTGCATCGCAGGATATCACAATAATGTATGTACCACATGATCATGCTTCTATGAGTGAGTCGATGTCTGAATCAGTATTTGCGGAAAACACATTAGTGTCTGATCAAAAGCAAGAAGAAGTCGAAAATGACAATAACATGTTTGTCTCTACAATGGAAATCTTAAATGACCAAAAAGATGAAATTTCAAGCAATGTACGCATTTCCAGTCCTGTGGAATCTAATGTGActagaaaaaataaacgtgCCTGTTGTGAATATGTGGATGACAAGATACAGAGCAATAATAAGCAACTCGACAAAAGCAATTCCGACATAGAAAGATCCGCAAGAACGGAAGACAGCGATGAGTCTGATTCTGATTATTTCATCGATACCAAAGACAACATATTGGGGAGTGTGAGCGACGCGATCATACGGATTAAGGAAGTGAAACAGGAAAACGGGATCGAATATCAATGCACATTATGTCTGCAGAACTACAAGCAATTACCGTGTATGTTGCTACACACCGTCGATAATCACGTTCCTAGCAGCGGTCCGTTCTTCTGTATGGTATGCGAAAAGGATTGCGAGAGTCATCGGGAGCTGCGAGCGCACGTGAAAACGCACACCGGACAGGATCCATATTCCTGCTTCATCTGCAGGAAGGGATATGCCAAGAAGAGATATCTGAAGAGGCACATGATGTGCCACTCCGACTTTCCGCGGCATCGCTGTTCAAAGTGCGGCTGTCGTTTTAAGACCAAGTTGGAGTTGGAGTCTCACATGAAGATGCACAGCGTACCCTACTCTTGCAATCAGTGTCCACGAACATTTAATCATAAAGGCAATTACAAGCGACATCTGGTCAGTCATTTGGATCCCCAAGGTCTTTACTTACCTAAGTATCCATGCAGACATTGTGGCAAGCGCTTTCCCAACAATCGTACCCTGGAAACGCATATTCGTGTACATACTGGCGAAAGGCCATTCAAGTGCCAGTATTGCGAGAAATCCTTCTCGCAGCGAGGTAACCTGATAAATCACACGAGGATACATTCGAATCCACGCAGCTATACATGCGAAATCTGCGGCAAAAGCTTCAATCAGCGTGCTACATTAAGAGACCACGGACTGTTACACACAGGCGAGAAGCCCCATGTGTGTAACGTTTGTGGCAAGGCGTTTACAGTTAGCGCAGCATTGAGAAGACATATGTTCAATCACACGGAGGACAAGCCATTCAAATGCGATACTTGTGAAATGGGATTCGTCGGGAAGTACGATCTACGACGACACATGAGGGTGCATGAGGATCGGCCTAAAGAGAAACGGAGAAGAAACACTATGTCAAAGTCAAGCGATTTACTCCAAGAAGAATCGAAGGAAATTGCCATAATAGAGGAACCGAGTACTGAAACTGTGTTCATAGAACAAGTATTTTTACCTCAAAATGTTACACAAATAGTGGTGAATCAAGTTGAAtcagagaaagaaaatgaagaCACATTGTTCAATCTTCACTCTTACAATTCAACTCTTATACAATACAGCTAA
Protein Sequence: MPRQIMGSNISCINNNKCRACMKEGDKMLPMYDDKSTSKINLPYKLAELTSIQIDKFDGLPNMLCSKCAYRTYAFYNFRLKVQESDKKFRMILENQMITTKEEELSDKDNEDSIVETDESLELNVSNDRSIHNADSLENIKIEIDDTIKNEQQYESHIPQLFENDRDNKENNVQLNELLHNILGINENQMDAHFVKTDIPEEISKILASQDITIMYVPHDHASMSESMSESVFAENTLVSDQKQEEVENDNNMFVSTMEILNDQKDEISSNVRISSPVESNVTRKNKRACCEYVDDKIQSNNKQLDKSNSDIERSARTEDSDESDSDYFIDTKDNILGSVSDAIIRIKEVKQENGIEYQCTLCLQNYKQLPCMLLHTVDNHVPSSGPFFCMVCEKDCESHRELRAHVKTHTGQDPYSCFICRKGYAKKRYLKRHMMCHSDFPRHRCSKCGCRFKTKLELESHMKMHSVPYSCNQCPRTFNHKGNYKRHLVSHLDPQGLYLPKYPCRHCGKRFPNNRTLETHIRVHTGERPFKCQYCEKSFSQRGNLINHTRIHSNPRSYTCEICGKSFNQRATLRDHGLLHTGEKPHVCNVCGKAFTVSAALRRHMFNHTEDKPFKCDTCEMGFVGKYDLRRHMRVHEDRPKEKRRRNTMSKSSDLLQEESKEIAIIEEPSTETVFIEQVFLPQNVTQIVVNQVESEKENEDTLFNLHSYNSTLIQYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00867634; iTF_00868283; iTF_01077671; iTF_01255006; iTF_00264480; iTF_00265192; iTF_00110000; iTF_00729527; iTF_00730955; iTF_01245391; iTF_00280123;
90% Identity: iTF_00867634; iTF_00868283;
80% Identity: -