Lpla018973.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020539.1:16173900-16176298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0005 0.099 14.7 1.1 1 23 99 121 99 121 0.97 2 13 2.7e-06 0.00054 21.8 0.5 1 23 127 149 127 149 0.99 3 13 1.3e-05 0.0027 19.6 0.3 1 23 154 177 154 177 0.98 4 13 5.9e-05 0.012 17.6 0.6 1 23 183 205 183 205 0.97 5 13 1.5e-05 0.003 19.4 0.2 1 23 211 234 211 234 0.96 6 13 0.00027 0.055 15.5 1.5 1 23 244 266 244 266 0.95 7 13 1.1e-05 0.0021 19.9 0.3 1 23 270 292 270 292 0.95 8 13 6.5e-06 0.0013 20.6 0.5 1 23 298 320 298 320 0.99 9 13 9.9e-07 0.0002 23.2 1.0 1 23 326 348 326 348 0.99 10 13 0.0018 0.37 12.9 0.9 2 23 474 496 474 496 0.94 11 13 0.046 9.2 8.5 7.9 1 23 501 523 501 523 0.95 12 13 0.0031 0.62 12.1 0.7 3 23 573 592 571 592 0.94 13 13 4.6e-07 9.1e-05 24.2 1.1 1 23 598 620 598 620 0.98
Sequence Information
- Coding Sequence
- ATGGTCAAGAGGAGAATCCTTGAGGTCCAAGTGTTGACAGGACGTGAAGCCAAGGCTGATGATGAAGAAAAATCTGAGAAGCACAACCACGCGCGATTAGAAATAGATTCCAATTCAACGATCCGAGACATGTTGAACGTAACCGGAGAGAATGAAGAAGAGGAAGCAACGTCAAAGAAGTCTTCTGAGATGACGTGTCGAAAAGAGCGAATTTCATGTCGCGAGAGCGACATCGGGAACACCGCGATTAACGCGGGGAGAAAGAAATTCGCAAGAAGGGAGGAACGGACGACGTACGAGTGTTCCGCGTGTCGAGCGTATTTTACTCGTCAAGGAGAGTTCAAACGTCACATGGTGAAGCACAGCGACGTACGTCCGTACAAGTGTACCGTTTGCGAGCAAGCCTTCAAACGTTCGTCGGAAGTGATGAGTCACATGCAAATCCACAGCGGCGTCACGTATGTCTGCGAAATGTGCGGCTTTACCACGATCAACAAAGTTTCTCTGAGAACTCACATTCGACGAGTGCATCGGCGCGACCTACGATATCGTTGCGAGCAGTGCAACAAGGGATTTATGTCGAATTACGACCTCGAGGATCACAAGGCGAGCCATCTGAACGCCAAGACCTTTGTCTGCGAGTACTGCGGGAACGCTTATTCGCAGAAATCGTATCTGGTCGCGCACAAGCGCTTGATTCACCGGATACGGAAGACCGCGCCGAAGCAGCATCGGTGCGAGCTCTGCAGCAGAAGCTTCGCCTCGGAGTACAGTCTTCGTAATCACGCGAGTTTACACTCGCAGAGGTTCCTCTGCGCCCAGTGCGGCAAGGAGTTCGCGACGAATTACGCGCTGAACCTGCACACTCGCATGCATACCGGCGAGCGGCCCTATCAGTGCAAGCTATGCGTGAAAGCCTTCGCGAGATCCACGGCTCTCAGGGTGCACAGGCTCACGCACACGGGCGAAAGACCGTACGTATGCGATCTCTGTGGGCAGAGTTTCACGCAACGCAGCAGCATGATGGTGCATCGTCGCAAACATCCCGGCAGTCATCCACCGCCGCCACCGTTGCTGCTCAGTCGACTTGAGTTTGATACCCAAAAGAGACGATGGACAGTGTGGGATGGTGAAAAGTATCAGAAAGAGATGATATTGTGTGATGCTGTTGTAACAGAGACAACTTCTAAAAAGAATGATAGGAAACACGGTGAATCAATAAAAAGGTACACAGAGGATAAACAACAACAAATGACAAAAAAgagtaaagagagagagcttaGTACAACGATAGAAGTAAACCAAAACTcggataaagaaaaaattaagtctATGACAGAAATATTATCCTCTGAAGACGCTGCAAAGaacgaagagaaagaagaagatgtGGATCGAGTATTAAATGAAGTGCGGAATGTGTGTCCAGTGTGCTTAAAGCGTTTCGATCATGAAAAGCGTTTGAGAAGGCATATTGTGGTCAGTCATAAGAAAAGAGCGTACAAGTGTGACAAGTGCCACGCGTCTTACTATACCAAACAATATCTGGAAAAACATTGTAAGAGTCATAGTAAGAGTCATAGTGACAATTACTTCTTCGAGTGTGACATAAGTCACTTGAAGTACGAGCGCGAGATAATGTTGAAGCAACATCAAGTACAAGCGCATCAAGTACATAGCGACACCGCTGCTCGGATGCACAAGCCGCGTACGATCTGTCCGATTTGCAAGAAAGTGTTTGTGTCAAGCGGTTTTTATCATCATGTTCTTACGCATGCCGAGATCAGGCCGTACAATTGTGATAACTGTGGCGAAGCCTTCACCCAGCGTTCCAGTCTCTTCCGGCATCGAAAAATTCATCCCGGTCCTCTTCCGCCTTATACATCGCAGATTTCCATCGCCGGTTTAGCTAAGATCGTTTTACAGAAGCATTCAAAACCatag
- Protein Sequence
- MVKRRILEVQVLTGREAKADDEEKSEKHNHARLEIDSNSTIRDMLNVTGENEEEEATSKKSSEMTCRKERISCRESDIGNTAINAGRKKFARREERTTYECSACRAYFTRQGEFKRHMVKHSDVRPYKCTVCEQAFKRSSEVMSHMQIHSGVTYVCEMCGFTTINKVSLRTHIRRVHRRDLRYRCEQCNKGFMSNYDLEDHKASHLNAKTFVCEYCGNAYSQKSYLVAHKRLIHRIRKTAPKQHRCELCSRSFASEYSLRNHASLHSQRFLCAQCGKEFATNYALNLHTRMHTGERPYQCKLCVKAFARSTALRVHRLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLEFDTQKRRWTVWDGEKYQKEMILCDAVVTETTSKKNDRKHGESIKRYTEDKQQQMTKKSKERELSTTIEVNQNSDKEKIKSMTEILSSEDAAKNEEKEEDVDRVLNEVRNVCPVCLKRFDHEKRLRRHIVVSHKKRAYKCDKCHASYYTKQYLEKHCKSHSKSHSDNYFFECDISHLKYEREIMLKQHQVQAHQVHSDTAARMHKPRTICPICKKVFVSSGFYHHVLTHAEIRPYNCDNCGEAFTQRSSLFRHRKIHPGPLPPYTSQISIAGLAKIVLQKHSKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867623;
- 90% Identity
- iTF_00867623;
- 80% Identity
- -