Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.18 2.8e+02 2.9 0.2 20 28 23 31 22 34 0.87

2 2 3e-06 0.0047 18.1 0.0 16 40 89 113 78 117 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.18	2.8e+02	2.9	0.2	20	28	23	31	22	34	0.87
2	2	3e-06	0.0047	18.1	0.0	16	40	89	113	78	117	0.83

Coding Sequence: ATGGATTATACGCCGATTCAGTATTTTGATATACTCGTTATTTACGGCGAATGTGAACAAAATGCCCACCGTGCCGCGCGCGAGTACAACATTCGCTATCCGGAGCGCAGAAGGATCAGTCACAATGTAATCATGCGATTGCTGTATCGCGTGAGAGAGACAGGATTCTTGGTACCCAACAGACAACTCAACGCTGTCGTCGAACGTCGCGCTCGTACAGTGCAGAACGAAGAGGCAATCTTACAAACTGTGAACGACAATTCGGATATAAGTATACGCGAATTGAGCCGGGAGtttgaaatatcaaaaagtACGGTTCAACGCGTACTTAAAGAAAATAGATACCACGCATATCACTACACAAAGGTGCAGCATTTATTGCCCAGAGATTACGCGGCGAGAGTGAGATTTTGCACGTGGCTACTgaatgaagaagaaaatcgaCCAGGTTTTGTAAATGATATAATGTTCACTGACGAATCATACTTCACGCCCGATGGCATCTTCAACACACACAACGCGCATATATGGGCAAATGAGAATCCGCACGAATttcatataagaaattttcaatatcgGTTCGGGATAAATTTATGGACTGGAATATTGAATACCTCGATAATCGGTCCCTTTGAAATGCCTGCAAGACTAACCGGAAATGGTTACGCGAATTTTTTACGAGCAGACATGTCGGAATtgttagaaaatgtatttctgGAACAACGACAACAAATGTATTTTCAACACGACGAAGCGCCGCCTCACATATCTCTACGTGCTTGTCGTGTGTTGAATGAGAGATATAGGAACAGATGGATAGACCGTGGAGGTCCGGTGCATTGA
Protein Sequence: MDYTPIQYFDILVIYGECEQNAHRAAREYNIRYPERRRISHNVIMRLLYRVRETGFLVPNRQLNAVVERRARTVQNEEAILQTVNDNSDISIRELSREFEISKSTVQRVLKENRYHAYHYTKVQHLLPRDYAARVRFCTWLLNEEENRPGFVNDIMFTDESYFTPDGIFNTHNAHIWANENPHEFHIRNFQYRFGINLWTGILNTSIIGPFEMPARLTGNGYANFLRADMSELLENVFLEQRQQMYFQHDEAPPHISLRACRVLNERYRNRWIDRGGPVH

Sequence clustering based on sequence similarity using MMseqs2