Lpla039486.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020546.1:12761080-12761616[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.072 1.2e+02 4.1 0.2 20 28 23 31 22 34 0.88 2 2 1.4e-06 0.0022 19.2 0.0 16 40 89 113 77 117 0.82
Sequence Information
- Coding Sequence
- ATGGATTATACGCCGATTGAGTATTTTGATATGCTCATTATTTACGGCGAATGTGAACAAAATGCCCGCCGTGCCGCGCGCGAGTACAACATTCGCTATCCGGAGCGCAGAAGGATCAGTCACAATGTAATCATGCGATTGCTGTATCGCGTGAGAGAGACAGGAATCTTGGTACCCAACAGACAACTCAACGCTGTCGTCGAACGTCGCGCTCGTACAGTGCAGAACGAAGAGGCGATCTTACAAACTGTGAACGACAATTCGGATATAAGTATACGCGAATTGAGCCGGGAAtttgaaatatcaaaaagtACGGTTCAACGCGTACTTAAAGAAAATAGATACCACGCATATCACTACACAAAGGTGCAGCATTTATTGCCCAGAGATTACGCGGCGAGAGTGAGATTTTGCACGTGGCTACTgaatgaagaagaaaatcgaCCAggttttgtaaataatataatgttcacTGACGAATCATACTTCACGCGCGATGGCATCTTCAACACACACAACGCGCATATAGGCAAATGA
- Protein Sequence
- MDYTPIEYFDMLIIYGECEQNARRAAREYNIRYPERRRISHNVIMRLLYRVRETGILVPNRQLNAVVERRARTVQNEEAILQTVNDNSDISIRELSREFEISKSTVQRVLKENRYHAYHYTKVQHLLPRDYAARVRFCTWLLNEEENRPGFVNNIMFTDESYFTRDGIFNTHNAHIGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -