Lpla011882.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020537.1:19478605-19480098[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-12 3.1e-09 37.9 0.0 1 38 14 51 14 58 0.90
Sequence Information
- Coding Sequence
- ATGAGAACATACAAGAGAAAAACTAATAGGGGTATGACCACAAAAGATGAATTGGCTACTGCAGCTGATAAAGTCATGTCAGGGCTTATGTCACTGAGAAAGGCCGCAAATGCATTCAATATCAATTTCATGACACTCCACCGTCATGTAAAGAAACTTAAAGTAGCTAAAGAAGGCAATATAGATCCAGTTCGTGTTCAAGTTGGATATGCAAAGCCAAGAAAGTTATTTAATCAGGATCAGGAAAAGGAACTGGCCGACTATGTGCTGAACTgttccaaaatttttttcgcactTAACACAATAGAAGCAAGACACCTTGCCTACGATTACGCAAAGAAGAATGGTCTGGTAGTGCCGCAGAATTGGGATGAAGTTAAAAAGGCATCAAAAGATTGGCTGTTAAGTTTCATGAAAAGAAATCCCATGTTGTCGATCAGAACTCCAGAACCAACCAGTTTAAGTAGGATGACGGGCTTCAACAGACACAACGTCTCAGAGTTCTTCAACAACTTAGGGGAGTTGTATGAGAAGTATAAGTTTGGACCGCAAGATGTGTGGAATATCGACGAGACTGGGGTAACGACTGTACAAAAGCCCAGCAAGATCATCGCATCAAAAGGGATGAAACAAGTAGGAGCAGCCACTTCTGGGGAAAGGGGTAATCTTGTTACTGTTGTCTGTGCAGTCAGTGCCAGCGGAAACAGTGTTCCACCCCTTTTTGTGTTTcccagaaaatatttcaaggattattttaaagttgatGGACCTCCAGGCTCAATTGGCGCTGCGAACCCGAGTGGTTGGGTGACGAAGGATGAATTCTTGTTGTTTATCAAACACTTTGTCCATCACACTCGTTGCTCCAAAGAGCGGCCTATTCTAATTGTCTTGGACAACCACAATTCACATATGGGGCTCAACATGATCGACTACTGTCGTGACAATGGAGTGATTTTGCTTTCATTCCCACCACATACTTCTCATAAGCTGCAGCTTTTGGACAAATCTGTTTACGGACCTTTCAAGACCTATTATAATTCTGCAGCTGATGGTTGGATGAAAAGCAATCCAGGAAAAACAATGATGATCTACAACATCCCTACCATAGTGAAGCTTGCACTTCAGAATGCAGCAACTCcgaagaatattatttcagGATTCCAGGCCACTGGTGTGTGGCCATTCAATCGTGACATTTTCACGGATGCTGATTTCTCTGCTTCTTTCGTGACAGACAGACCTATGCCAAATGATACAGCGTCTCCAGACCTGAATGAGCACTTGAACCAGAATGAACATTCTTCTTCTCCTGGTCTTTTAACCTCtaaggagagagaaattacGAATGAGGAATTGGAATTGGAAAACGTAGCAATCCCATCCACTTCTGCGGAAAATTCATCtgagaaaatacattttagcCCAGAACAAATCAGGCCATATCCCAAGGCTGCTGCTCGTGTAAAAAAGTCACAAAGAGGAGAAAAATAA
- Protein Sequence
- MRTYKRKTNRGMTTKDELATAADKVMSGLMSLRKAANAFNINFMTLHRHVKKLKVAKEGNIDPVRVQVGYAKPRKLFNQDQEKELADYVLNCSKIFFALNTIEARHLAYDYAKKNGLVVPQNWDEVKKASKDWLLSFMKRNPMLSIRTPEPTSLSRMTGFNRHNVSEFFNNLGELYEKYKFGPQDVWNIDETGVTTVQKPSKIIASKGMKQVGAATSGERGNLVTVVCAVSASGNSVPPLFVFPRKYFKDYFKVDGPPGSIGAANPSGWVTKDEFLLFIKHFVHHTRCSKERPILIVLDNHNSHMGLNMIDYCRDNGVILLSFPPHTSHKLQLLDKSVYGPFKTYYNSAADGWMKSNPGKTMMIYNIPTIVKLALQNAATPKNIISGFQATGVWPFNRDIFTDADFSASFVTDRPMPNDTASPDLNEHLNQNEHSSSPGLLTSKEREITNEELELENVAIPSTSAENSSEKIHFSPEQIRPYPKAAARVKKSQRGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868034; iTF_00128111; iTF_00129652; iTF_00128890;
- 90% Identity
- iTF_00868034; iTF_00128111; iTF_00129652; iTF_00128890;
- 80% Identity
- -