Lnig009579.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- -
- Assembly
- GCA_001045655.1
- Location
- LBMM01002306.1:10910-15195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.2 5.5e+02 1.4 0.2 1 16 50 65 50 67 0.88 2 16 9.2 9.9e+02 0.6 0.4 1 7 108 114 108 116 0.90 3 16 0.019 2 9.0 0.6 1 23 359 382 359 382 0.91 4 16 0.14 15 6.3 0.7 1 23 388 410 388 410 0.92 5 16 0.064 6.8 7.4 5.3 1 23 494 516 494 516 0.93 6 16 0.0017 0.18 12.3 0.4 1 23 523 546 523 546 0.92 7 16 0.00047 0.05 14.1 4.4 1 23 552 574 552 574 0.97 8 16 0.0007 0.075 13.5 2.2 1 23 580 602 580 602 0.99 9 16 9.3e-07 9.9e-05 22.6 1.2 1 23 608 630 608 630 0.98 10 16 0.024 2.6 8.7 0.1 1 23 643 666 643 666 0.96 11 16 8.1e-05 0.0087 16.5 4.3 1 23 682 705 682 705 0.96 12 16 0.00043 0.046 14.2 0.7 1 23 713 736 713 736 0.98 13 16 1.9e-05 0.002 18.5 0.5 1 23 742 764 742 764 0.98 14 16 0.0023 0.25 11.9 8.5 1 23 770 792 770 792 0.98 15 16 1.8e-05 0.002 18.5 2.8 1 23 798 821 798 821 0.98 16 16 0.00043 0.046 14.2 0.5 2 23 827 848 826 848 0.97
Sequence Information
- Coding Sequence
- atgtcaaatgatACATTGATATGTCGTTTGTGTGGTCTTAAACATGAACTCGCAAAGTCAAAGTATATCTTTGACGAGACGACTAATTTAgcacagaaaataaaagacacACTACCAATCAGGatttcgCAAGATGattattccaaatatatatgcttGGACTGCTACGAAAGAGTTACCACTCATTATgactttattcaaaatatcttGCAATGCTCGAAGGAGAACGTCAATATGGCAAAAAGCAATTCTTTGTTTGAGGTcaataaaagtgaaaaaatggaaattgcaGCAATTTCCAAACTATATAATGACATGATATATACATGCCCAAATtgtaatatagatttaatgaTCCTAGTAAAGAGCAATCCTGAGGATTGTAATTATGCGTTTCAAATTTCATTGGCCATAGTAGATCAAATGGAAAAATCAATGGAAGGAAATATCCAAACCTGTGAAGAGACAATAGAACTTGTTAATACTTGCATAAAAACATCAAGTGTAGAAGATAATTTGCATGAATCATCATTGAATCATAGTATCGTCAACGATATGTTGAAtgataagaaacaaaatatcaaCAAAACAGATGAAAACTTACCAATACTACAAGaagacataaattatattgatactaGCATTACACTTCAAAAGGATAATGAATCACAACAACTGAGCAGAGgtacaaaaagaaaacttaaggaaaatatttcttgcgaAACAGCTACTAAATCACAAAAACTGGAAACGAAGTTAGATGCAACAGATAGTGATATATTGGACAATGATTATGTAGATTGCGTAAATAACTTGATAAAATACGAGACTCTAAATGATGGAATAGATGAACGCGTGGAATGGCTTAGTAGTGAAATAAActtcaaagaagaaaatagtACAGTGTATACGGAAACTGAAGGAGAACACATTAATGAAAATGGTACCAAATACGACGATATCGACAGTAAGAATTGTCCAAAAATTGTATGTGATTTATGTGGAGCTCGTTATCTTTCACAGTTAAAATACGAGTTTCACATGGAGAGACACAAGTCAGGCAAAATGGATAGATATGTCTGCACAGTATGTGACAAAGAAGCTAGCAGCGAGAACTTATTGTGGGATCACTATTTCCACACACATAAAAGCTCGATGCGATATGCTTGCATACAATGCGGCAAGTTGTTCATGAAGAAACCGAGATTAACTGGCCACCAAAAAAGACATAAACACTTTGGTatcaaagagatatattttgagatgGGCGCGGATGAAATAACTGTCAATCAAGCACGGAAAGCTATCGCGGTCGAAATACAGGAGCGAGTTGCTGTAAATTGTAGTCTCtgtggaaaattaataacagatttaGATCCGGATGCTATCAACGATTTGGCAACATGCGCGGCCTGCGAGGACTCCACTTTATCGCTAATGGTCGACGGAAACGAAATGAAAGTGATCTCGCCGCGACAGTATCATTGCTCGAAATGTCCTAAACATTTTGTGCGCAAGGAGAGACTGGAATTCCATGAGATGAgacataatgaaaatatgaacgAGTTTGTCTGCAGCACATGCGGCAAGGAGTTCAGTGCAGAGAATTCTTTGTATGAGCATTATCTCTTCGTACACAAAGGAGCTAGGCCACATATTTGTGAGCAGTGCGGCAAGTCATTTCAGCTGAAGGCGCGATTGAAGGAACATCATCGCACGCATACAGGCGAGAGACCTTATCAATGCGACGTATGCGGTCTGCGCTGCATGACTACCAATGCACTCAAACTCCATAGGAAGACTCATTTCTCTCACAATCGCTATGTTTGCAACATATGTGACAAGTCCTTCAGCAAAAAGCAGAATATGAACGAACATTTAGAGAAGCACTGGAAAAACGATAAGAATGTATCGCTGCCGCAATTGTTTACGTGTCCGGTATGTGCCGAAGATCTGCCGACCTACCGTATGCTGAAGTATCACATGATGGAAACCCATCAGATCGACCGTCAAGATCCCTTACTAACAACACAAAAACCGTGGTACGAATGCAACGAATGTCACGAGAAGTTCAAACATCAAATGTCACTCAAGGCGCACAAGGAAAAGGTGCACGAGGGCAAAGTCAATCCGATATTCCAGTGCGATATGTGCAACGCTACATATAGAATCAAGCAGCTGCTGATAAATCATATCAAGAGCAAGCACGATGGCGAGAAACGATACAAATGTGCGCAATGCGGCAAAGGATTCAATGATACTAAATCCTTGTACAATCACATTTTACTACATACTGGTAGGAAGCCATTCACTTGTGAGTATTGTCACATGAGCTTTAGGCGAAAAGACTCCAGGGACCATCATCGCCGTAAGCACACAGGCGAACAGCCTTACCAATGTTCGGATTGCGGCCAATCGTTCTCTACCTACAACAATCGCTCAAAGCATCGCAAAAGGGAACATGGAGAAGGTGAAATTGAATGTCCAGAGTGCGGAGAAAAATGCAACAGTCAACAGGAAATCAGAATTCATCTGAACAAGCATCTCggtgaaaaattaaacaaattacaaTGTGAATAA
- Protein Sequence
- MSNDTLICRLCGLKHELAKSKYIFDETTNLAQKIKDTLPIRISQDDYSKYICLDCYERVTTHYDFIQNILQCSKENVNMAKSNSLFEVNKSEKMEIAAISKLYNDMIYTCPNCNIDLMILVKSNPEDCNYAFQISLAIVDQMEKSMEGNIQTCEETIELVNTCIKTSSVEDNLHESSLNHSIVNDMLNDKKQNINKTDENLPILQEDINYIDTSITLQKDNESQQLSRGTKRKLKENISCETATKSQKLETKLDATDSDILDNDYVDCVNNLIKYETLNDGIDERVEWLSSEINFKEENSTVYTETEGEHINENGTKYDDIDSKNCPKIVCDLCGARYLSQLKYEFHMERHKSGKMDRYVCTVCDKEASSENLLWDHYFHTHKSSMRYACIQCGKLFMKKPRLTGHQKRHKHFGIKEIYFEMGADEITVNQARKAIAVEIQERVAVNCSLCGKLITDLDPDAINDLATCAACEDSTLSLMVDGNEMKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKEFSAENSLYEHYLFVHKGARPHICEQCGKSFQLKARLKEHHRTHTGERPYQCDVCGLRCMTTNALKLHRKTHFSHNRYVCNICDKSFSKKQNMNEHLEKHWKNDKNVSLPQLFTCPVCAEDLPTYRMLKYHMMETHQIDRQDPLLTTQKPWYECNECHEKFKHQMSLKAHKEKVHEGKVNPIFQCDMCNATYRIKQLLINHIKSKHDGEKRYKCAQCGKGFNDTKSLYNHILLHTGRKPFTCEYCHMSFRRKDSRDHHRRKHTGEQPYQCSDCGQSFSTYNNRSKHRKREHGEGEIECPECGEKCNSQQEIRIHLNKHLGEKLNKLQCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869094;
- 90% Identity
- iTF_01077683;
- 80% Identity
- -