Lnig015516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius niger
Gene Symbol
-
Assembly
GCA_001045655.1
Location
LBMM01000743.1:27486-30420[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.2e-06 0.00055 20.2 1.6 1 23 318 340 318 340 0.97
2 11 0.0002 0.022 15.2 0.4 1 23 352 375 352 375 0.95
3 11 0.0005 0.054 14.0 1.8 1 23 419 441 419 441 0.97
4 11 4.5e-07 4.8e-05 23.6 1.5 2 23 496 517 495 517 0.97
5 11 5.7e-05 0.0061 16.9 1.1 1 23 522 545 522 545 0.95
6 11 8.1e-05 0.0087 16.5 0.2 1 23 580 602 580 602 0.97
7 11 7.8e-07 8.4e-05 22.8 1.7 1 23 612 634 612 634 0.96
8 11 3.8e-06 0.0004 20.7 1.8 1 23 640 662 640 662 0.99
9 11 8.9e-06 0.00095 19.5 0.2 1 23 668 690 668 690 0.98
10 11 0.00014 0.016 15.7 3.4 1 23 696 718 696 718 0.98
11 11 0.00021 0.023 15.1 0.4 1 21 724 744 724 745 0.95

Sequence Information

Coding Sequence
ATGGCAGTTTCGAACGATGACGTGATGATGAATAACATGGCTCACGCGGAGCGAATCGTGGACGACGAGTGCCGCATCTGCCTCAAGCCCTGCACGGAGACGTGTCAGCTGTTCCGCAACGGAATACCGGAGAAGCTGATGGCGATCGCCGCCGTGCAGGTTGAACTAACTGGAGGTCTTCGCAATTTGCAGGTGGAGGAGGGAGATGGTCTTCCagcttttatttgtttatcctGCAACCATCTCCTCGACATGTCCTACGCCTTTAAATGCCAGATTCAAGATTCCGATATGAGGCTACGTCAGATGCTGAAATCGCAGGTTCGGCCTATGCTGCACGACAAACACGCGAAGGATGCCACAACAATGGtcaaacatataattacaaatctaTCCAATGTAGTCTCCTGTGAAAAAGACAATGTTGTAGAACAGAAAATCTATACACATCATGATATTGTTACATTTGATAATACCAGCATTCAATCTGATGCAATAATTAACAACGAATCTTGCATGCATGACGAATTTATACAGAAGACGGAGGAAATTACAGAACCAAATGAAAAAGATGTGCAGTATGATATGCTCAAAGAGAATGTACATAACACTGAAATAATAGAAGTAGCTTTATGTCACGAGGCACACATGGATGATGCGCTTACCGATCAGTCAAATCGATTGTCTGACTCGCCAACGGATGACAGATGCATCAAGCaggaacaattaatattacctGAGGATAACGAGACACTGGAATGTTTGACGGACGAAAATAGAGAAGACACATTAAAGATCGAAGTTAAGAACGATGTGTTGTTGGAGGATTTCAATAATCACGATGTTTCGAAGCAGATTACGATGTTAGAAACGGACAACCAAGATATGAAAAGCGTTATAAACTGCAGTGACGATGAAGAGAAGCCACTGATAAGTAGGACAATCAGACATCACAGATGTTCGCTTTGCTTGAGATCGTTTTCGACGAAAGTGGCGTTACAGCGACATATGATTGTACACAAACACAAACATAAACACAAAACGAAACTGCGTTATGTGTGTTATGTATGTGACAAGCAATTCTCGAGCATTGCTAAGTTGAAGAGCCATGTGCTTAACAGTCATGACAGTCAGACGGTGGATGATAAAACGACGCAAGTAActaatgaagataaaaaagttaaaacatCGGCAAAAGTTACTAGAAGCGGCAACGTGTTGGACGGcacgagagaggagaagaaaaactttaaattcgcATGCAAAGTTTGCTCAAAACAATTCATATATCAAAAGTCTTTTCTATCTCATGCCAAAACGCATCCTGAATATAATGAGGAAACTTCGGGTGACGTATTCGATCAGTATGCAAATAAGACAACGACTGAGCAGAAGGAGAGGACACCAACGTTCAGAGAAAATGAAtccgaggaagaggaggaagaagaggacgacgacgacagcgaTCTGCCGATCGAAAGTCTACAATGCACGCAGTGCGGTAAGCTTTTCGCCACAAAGAGGAACCTGAAGAGGCACATCTCGACGCATAGCGGCTTGAAATTCAATTGCTCGACCTGTGGGAAAGGGTTCTCACGGATTGACAAGCTGAAGGATCACGAACAATCGAAACATAAGGAGGAAATATTCGGCAACACTGACGACGAGGATGATGACGATGAGGATAATGAGAACAAAATATACAAGATCTTATTACAGGACCGACACAACAGGCCGCACAAATGTGCACTCTGTCCGAAGGCGTTCGCGCAGGCTCAATCTCTGGCGAATCATGTGGAGAGGCACAAGCGAGTGAAGGACACGCAGAAGCGATTTCTCTGCGAGAAGTGCAGCAAGTGCTTCGCCCAGAGCGGTTCCCTAGTGGCGCATATGCGCACGCACACCGGCATCAAGCCGTACGTGTGTAACACGTGCAGTCGCGCTTTTACCAAAAGCACATACTTACAGCTGCATTTGAGGACCCACAGCGGTGAGAAACCTTACATCTGCCAATACTGTAGCAGAGCGTTCGCTCGAGCCAACACCCTAGCGCGACACATCACGATGCACACCGGTGAGGCCAAGTATCATTGCAACGTCTGCGCCAAGTCTTTCCGACGACTGACCTCGCTGAATGAGCACACCTACACGCATACCGGTCAGCGACCTTACGTGTGCAAGCTCTGCACCAAAAGCTACAACAATGCCGGATCACTGTACGCCCACACGAAGAAGTGCAAGGCGCAGCAGCTGTCCGGCTCGACGACGGCCACGTTCGCGGTCTCCGCGACGGATAACACGCCGCAGCAGAACGACACGTCCATGCCCCAGCTATTGATCTACTCTCAGAGAAAGCTGGTGGAGGAGGCGACGGTAGGTCAAGTCGTATCCACGCCACAATATGGCGTAATGATGGCGAATGTGCACAATCAGAAAACCGTGCCTGCCAACGTGATTCAACCGTTCGCTGTAGAGGATCCAAGTGTGTACAATTCGAAACAGTTCAAGAACCCGTATTACACTATTTATCCGAACATGTAA
Protein Sequence
MAVSNDDVMMNNMAHAERIVDDECRICLKPCTETCQLFRNGIPEKLMAIAAVQVELTGGLRNLQVEEGDGLPAFICLSCNHLLDMSYAFKCQIQDSDMRLRQMLKSQVRPMLHDKHAKDATTMVKHIITNLSNVVSCEKDNVVEQKIYTHHDIVTFDNTSIQSDAIINNESCMHDEFIQKTEEITEPNEKDVQYDMLKENVHNTEIIEVALCHEAHMDDALTDQSNRLSDSPTDDRCIKQEQLILPEDNETLECLTDENREDTLKIEVKNDVLLEDFNNHDVSKQITMLETDNQDMKSVINCSDDEEKPLISRTIRHHRCSLCLRSFSTKVALQRHMIVHKHKHKHKTKLRYVCYVCDKQFSSIAKLKSHVLNSHDSQTVDDKTTQVTNEDKKVKTSAKVTRSGNVLDGTREEKKNFKFACKVCSKQFIYQKSFLSHAKTHPEYNEETSGDVFDQYANKTTTEQKERTPTFRENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRIDKLKDHEQSKHKEEIFGNTDDEDDDDEDNENKIYKILLQDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNVCAKSFRRLTSLNEHTYTHTGQRPYVCKLCTKSYNNAGSLYAHTKKCKAQQLSGSTTATFAVSATDNTPQQNDTSMPQLLIYSQRKLVEEATVGQVVSTPQYGVMMANVHNQKTVPANVIQPFAVEDPSVYNSKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00109993;
90% Identity
iTF_00869066;
80% Identity
-