Basic Information

Insect: Lasius niger
Gene Symbol: -
Assembly: GCA_001045655.1
Location: LBMM01002635.1:4845-14050[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.025 2.7 8.6 3.1 1 23 1219 1241 1219 1241 0.97

2 19 0.021 2.2 8.9 0.5 2 23 1278 1299 1277 1299 0.96

3 19 8.7e-05 0.0093 16.4 1.2 1 23 1369 1391 1369 1391 0.97

4 19 0.091 9.7 6.9 3.1 1 23 1394 1416 1394 1416 0.98

5 19 1.6e-05 0.0018 18.6 0.8 2 23 1468 1490 1467 1490 0.93

6 19 8.9e-05 0.0095 16.3 1.3 1 23 1496 1518 1496 1518 0.95

7 19 0.00081 0.087 13.3 0.7 1 20 1524 1543 1524 1548 0.94

8 19 6.9e-05 0.0074 16.7 0.9 2 23 1623 1644 1622 1644 0.95

9 19 0.00059 0.063 13.8 4.1 1 23 1694 1716 1694 1716 0.96

10 19 0.00036 0.039 14.4 0.7 1 20 1721 1740 1721 1742 0.94

11 19 0.061 6.5 7.4 0.3 2 23 1753 1774 1753 1774 0.97

12 19 3.7e-05 0.004 17.5 0.6 2 23 1813 1834 1812 1834 0.97

13 19 3.4e-05 0.0036 17.7 1.6 1 23 1839 1861 1839 1861 0.95

14 19 0.00019 0.02 15.3 2.8 1 23 1867 1889 1867 1889 0.98

15 19 6e-06 0.00064 20.0 0.4 1 23 1905 1927 1905 1927 0.95

16 19 4.8e-07 5.2e-05 23.5 0.6 1 23 1933 1955 1933 1955 0.99

17 19 5.3e-05 0.0056 17.1 0.2 1 23 1961 1983 1961 1983 0.97

18 19 0.031 3.3 8.3 6.9 1 23 1989 2011 1989 2011 0.96

19 19 0.0066 0.71 10.5 0.6 1 20 2017 2036 2017 2038 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.025	2.7	8.6	3.1	1	23	1219	1241	1219	1241	0.97
2	19	0.021	2.2	8.9	0.5	2	23	1278	1299	1277	1299	0.96
3	19	8.7e-05	0.0093	16.4	1.2	1	23	1369	1391	1369	1391	0.97
4	19	0.091	9.7	6.9	3.1	1	23	1394	1416	1394	1416	0.98
5	19	1.6e-05	0.0018	18.6	0.8	2	23	1468	1490	1467	1490	0.93
6	19	8.9e-05	0.0095	16.3	1.3	1	23	1496	1518	1496	1518	0.95
7	19	0.00081	0.087	13.3	0.7	1	20	1524	1543	1524	1548	0.94
8	19	6.9e-05	0.0074	16.7	0.9	2	23	1623	1644	1622	1644	0.95
9	19	0.00059	0.063	13.8	4.1	1	23	1694	1716	1694	1716	0.96
10	19	0.00036	0.039	14.4	0.7	1	20	1721	1740	1721	1742	0.94
11	19	0.061	6.5	7.4	0.3	2	23	1753	1774	1753	1774	0.97
12	19	3.7e-05	0.004	17.5	0.6	2	23	1813	1834	1812	1834	0.97
13	19	3.4e-05	0.0036	17.7	1.6	1	23	1839	1861	1839	1861	0.95
14	19	0.00019	0.02	15.3	2.8	1	23	1867	1889	1867	1889	0.98
15	19	6e-06	0.00064	20.0	0.4	1	23	1905	1927	1905	1927	0.95
16	19	4.8e-07	5.2e-05	23.5	0.6	1	23	1933	1955	1933	1955	0.99
17	19	5.3e-05	0.0056	17.1	0.2	1	23	1961	1983	1961	1983	0.97
18	19	0.031	3.3	8.3	6.9	1	23	1989	2011	1989	2011	0.96
19	19	0.0066	0.71	10.5	0.6	1	20	2017	2036	2017	2038	0.90

Sequence Information

Coding Sequence: atggatCTAAAGACCAAGCAAATGAGAGAGCTACTGGAACCTCTACAACAGCAGatAAGCAAGCTGCATTCATTGCTAACCAATGTTTCTATTAATTCATCAGAAATTTTGGTTACAAAGTCAACGCTCTTTGAACAACTGCATTCTTTAACTCAGAGATTTAAGAATTTAGCAAGTAACGATAATTGTGACCATGAAGAAGCAAATGTTAAGTTTATTGATACAGCGACAAATTCTAAACACATTTCTCCATTGAAGGATATTGATGAACTTaTTAAAGATCTTAAGAGCaacgatattaataaacacaCGACAGAATTATTGCTTAATAATTTCACACTAGCTTTGCGAGCTTTAGAAGATTTAGAATGTTTGCCGTTGAAGCAAAGGCTCCAAGATTGTCTGGATTATGTTCGAGAAATGAGCACAGCAAATGAGATTGAGGatcttcaaaatataaagGAACTTGGTACTTCAATATTGGAGGTACTTGAACCGTTACAAAAATACAGAAGAAGTTTGGTATCTGCTTTCTTGTCAGAAAAGCTGGCTCTATATTCCTCTCAACTATGCACATCATTTGAGATGCTAGTACAATTGGCTCAGGAGCAGCATCGATTAAATGCAccaatttatgcTTCCAAGAAGTATATTTGTGAAAGAATGTGTACTTGTTGCGAAATGATCTTAAACTTGCTGAATGGTTCAAACCCATCACTGGAAGAAGAAACTTTTGAGAAGGAGAATCATTTCGTCtatagAATGGATTTAGCGTTAGacattatattagaaatgtcAAACAAAACGCATCAGGAGCAATTATCTGAATGTGCGGAACTATGGTTGAGACtggaaaatgttttttctcATGCTATGGCAATTACCCAAGTGTGTCAGCTGTACAATTTTAAAGCCATAACCGGATCATGTCAGTCTATAGTATTGgaatatgagaaattaaaGCAGCAATTACTATCCGAAACACCAGATCCAGCGTTAAATAACTTGTTTATGCACACCTTGACCGATGCTCTTTATCGTTTAGAACGTAAAGTCAATATAGCAGTATTAACACTCGCGATGGAGGTGTTCAGCAATCCTTATGCGGCTTTGAGGAAGCTCGTTATGACGTGCGGAAATTCATTAAGCGCGAAAACAAGATCCAAGAGTGatctaaaaaatcttatagaaGACTTTGATCAACTTTTTGACCAAACTATGCAAATTGGAATATTTGCTATTGCTTGTTGCAAGGACATGAATCgtaataataaaattcgcaaTTGCCTCGCCGGATTCGAATCCTTGGAGACGGAATTGATTTCTGCCATAACTTCCTTCTACTTGCATCcagataataaagaaatgcgTTCCAGCGTCAAACTATTGACTACGCAGTGGCAACGAGAGATGAACAAGTTTCAAAATGTTGTAAACCTCATTATAAATTCAGCTGCCTTCTGCGAAataGTTATGGACAGTCTTCAAGAACGTATAACGGCAATCTCGGATTGTCTAGATAACAGACAACCGGTAACACAACTTCAGGTGCAAGGCATCGTTCAACGTGCTTCGACTTTATCTAGCCAAGTGACAACGATTGTAAATGACATTggtattgaaaatattgatcgtCACACAATAATGATGACAAGAGAATTAAAAGCAGCTATATTTGAGGCCAATAAAGCTGCCAAGACTCTCCTGATTGAAAATGCAACAGAGCCTCAGCAATTGCGAGTGATAAAACGATgcgaattaatattgaatgtcGTTCAAAGATTGCATCCTGTTCTATGCATAATCATGAACAATACGACACATGAAAAATCTGTAAGAACTCAAGGAGATTCCAGCCATgGTATTTCAAATATCGTCAATTTTCCATCCACAATCTATGGTTTACCACGCGATGAAAATAGTATAGTTTATATCAGAACGCCCTACACAGtAAAAGCGTATAAATCACAGGTGTCCATTCAATCGGCAAATAGCATAATGCCAAAACCATCGGATTTGTCATACTTGATACCGTACATAAGGAGCGGTCGCACTTTGCGCAGCGAGCATTCCATCATGTATAATACAccgcataaaaataaagacgCAATAGAGCCAGTTGTCAAAAGCGACATATCCCTTAGGAATCTGTCTAGCATTAGACAACATCTTTTTAGTAGAGATAGTTTCAAAGTCCATAACATTGATATATCTGAAGACAGCATGGATTTAACAGcTATCTTAGAGAAGATTACTTTGTCATCTACATCGGGACATGCAACGTTTGCATCTTGCAAATCCTTAAAAGCACAGAACATGTCTTCTGAAAGTGCAAATAAAGAAATCGCCTCTAATACAACGGTAGAAAAATTATCTGGAACTGTTAAACGAGAAAcgaaaaattgtgcaaataaaTCTGCAATAACAGAGAAGGTACGTGATTGTACTATATCTGGTGGTGGTGATGCATCTTTAGTCATGGAAACCTGTCAAAAGCTTAATAGTGTTCAACTTTCAAGTAATAAGATTCAAAAATTGACATTAGAAAAACAGGAgATGTTACCAGGCGATGGTCTACCGGCACAGGTGTGCTGCGTGTGCGCCGACAAACTGGAGTCGGCGTATGAATTTAAGTTACAAGTGGAGCAGGCCGACAGTGTCCTAAGGAACAGGTTTGTCGGAGGGATAATAAAGGAGGAATTGTTTCTTAACGAGGTCGAGATACATTTAGATGCCGATTGCGATAGGAATGATATAGAGGAGATGAATGTCAATACCGACTACGAATCTACTGTCGCAGTTCTGTCAGAAGAATCAGACGTCGATAAGAACTTTTTGAAAGAGCAATTAATGATCTTGGAAGATGAGAAATTGACACATACGGAAGAAATGCAACAAGATTTGGAACAGGATCATTCGCAGGAGATTACACAAGAAGTTAGTCAGAGTATTGTAGAAGAGCAGCAAGAATTAGTTGACACGAAGGATAATGATATGTCAAGTACTATCAATGAATCTAGGAACCAAAAACTTTGCAtgaacgaaaatattattccgaGTTATATAGAGGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAACAGTGTGTGTTGCCAGCTGAACAATTTCCTTTGCAAGAAAGTATACAGATGGACACACAAGTTGAACAAAGTATAGTGGAATGCCAAGAAACATTATCTGAATTTAATCAAGAGAATCAAGTTGAACAAATTGAAGAGAATGAAGCAGAACAAATTGAAGAGAATCAAGCTGAACAAATTCAAGAATATCAAGTGGAGCAAATTCAAGAATATCAAGCGGAGCAAATTGAAGAGACTCAAGTGGAGCAAATTCAAGAGACTCAATTGGAGCAAATTCAAGAGACTCAAGTGGAGcaaattcaagaaaatcaATCTGAGCAAAATCAAACTGAcgacaagaaattttttaatgaagaaatgtCTACGACTGATAACGAACCGGCAGTGGGACAAGATTCACCTCAAAACGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGAACGTTCGCTGAACGGGATTCCGACGAAGAGAACTATTTCGAAAATCTGAATCTTAGTTCTCGATTGAAAAAAGCACAGGCGGATAAGGCAGAGAAGATCTTCTTTATGTGTTATTTGTGTGACAAACAGTTCCTGTCGAAGAGCGTTCTGAAGGAGCACATGCACTCTCATGAAGAAGTGAGGAAAGCGCTCTCCCTAAAGAAAACGCCGGAGAAGCCGCAGAAGATGCAGACCAACATATCCGCCACGAAGACTCCGCCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAATCTCGTTTACTAAGCACATTAAACAGCACGAGCGGGAGCGAGAGGAGGCGAAAGAGGACCCTATGCCGCTCGAAATTTCGTTCCACGAAGATGAGCATAGTCTAGACTTTGATGGTAACACTTCGGACAGAGAATGTAGAAGACGAACGAGGAGAGGAAGTACAGCCGACGGGAACGACGACGCCACGACGAGCGACAACGAACacgataaaagaagaaaacggaATCGCGTCGAATTCGCATGCGACAAATGTCCAGAGAAATTTGATACGAAGCGAAGCTTGCAAAAGCACTCGCTCACGCACGTTAGCTTCAAGTGCAACCTGTGTCACGACGAGTACGACAGTCTGGAGCAACTGAGAAATCATCGAACGAAACACGTGATCGAAGGCGTACTCACCGAGCAGGATTTGGAAGAGGACATGAAACAGATGATGGCCAAGAGCGTCGAGAACTACGATGACGAAGACAACAAAAAcgacgaggaagaggaggacaATGACGGCGAATTCATCGAACATGCGAAGGAACTCAAGTGTCAGAAGTGTCCAATGACGTTCTCGCGCAAGAAGTTGCTGTCCAGACACATGGAGGCGGCGCATTCTGGAACTAACAGCTACGATTGCAAGATATGTCGTCAACAGTTCACGCGGAAGGATCTTCTGCGCAGACACGCCGAGCAGCACGCGCGAGTAAAGACCTACAAGTGCACTCAGTGCAACAAAACTTTCGGCAACGAGCTCACTCTGAGAAATCACCTGGTCGCCACGAATCACAAGACGTTTATACATGGACAAGAATACGATCCGAACAAGCGTATAAAGCGCGTGGCCGCGAGAGCGGCGCAGAAGATCATTGACAAGATCAAAACGGAGGACGGTCTGGAGGATTATGACGACGATAACGACAATGTCGATTACGACGCCAAGTTGGACGGGCATTATTACCGCCGTAAGCGCGACGCTACACCAAAGAAGTACAATTGTAAGAAGGATTTAGAGTGCGCGACGTGTAATAAGAGATACAGTTCGAAGCAAGCGTTGACGAAGCACATGGAGCAGCATGTGAAAGACGAGAAAGCGGCGGAGAAGTTGAAGAAGGCCACTTCGGAGAAGAAGGAGACGCAGAAGTCGAATAACATGACAGGcgataacgacgacgacgacgatgactcGGACTTCGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGCGTCACGTGCAAGAAACGCTACAGCACGAAGAAGTCGCTGCTGCGGCACCAGCTGCTGCACGAGGAACCGAACTTCGAGTGCGACATTTGCAACGTCAAGTTCTATCGTAAGGACAAGCTAAAGGCGCACTACGACAAGTGCTCGGAGAAGAATCCCGATCAGGTGAGAAAGTGCAATATTTGCGGCGACAGTTTCGAGAACAATGAGATCCTGCGGGAACACCGGGCCAAGCACGTCACCGAGGGTATCTTAACGGAGGAGGATTTGAGGGACATCGAGCCGAAACCGGAGGAGAAGAAACCGGGCGAGAAGATCGGCCGGAAGAGGCGAACCGATATCGTGGGCCTCGAGTGTACCGAGTGCAACAAGCAGTACACCTCCAGGAAGGGTCTTCTGCGGCACATTCAGGTACACGAGGGCAAGAAATACCTGTGCGACATATGCCCGAAGAAGTTCTATCGGCGGGAGCATCTCAAGATCCACGTGGCCAAGCACAATATGATAAAGCCGTACAAGTGCACCCGCTGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTGTCCAAGCACGATCGTACCTTCAAGAAGAACAAGGAAACCGACAGCTCGAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCTCATCTGCGCGCGCACAACGGCATCAAGCCGTACGTGTGCGAGGTCTGCTCCAGGCCGTTCACCACCAACGCCTATCTGAAGATGCACATGCGCACCCACACGCAAGAACGGCCGTACATCTGTCAGTACTGCTCGCGAGCGTTCGCGCGGGCCGACACCCTGGCGAATCATCTGACGTCGCACACCGGCGAGGCCAAGTATCACTGCAAATGCTGCCCGAAGAACTTCCGGCGATTGAAGTCCCTCAAGGAGCACATGTTTATTCATACGGGTCAGCGACCTTACGAGTGTCCGACCTGCGACCGCAAGTTCAACAACAACGGCAGCCGCTACGCGCACAGCAAGCGCTGCAAGCAGAACCTCCTGCAGAATCAGAACCGCGCTCAGCAGATGATGCAGCAACAGGCGCAGccgcaacagcagcaacagcaacctCAGCAGGTGCAGATACAAGTGCAGCAACAGCCGCAGTCGATCAGGATGCATCAGACCACGCTTGGCCAAGCGCAGATTGTCAAGGCGCAGAGCATCAAGACGATCGCTATAGCGAGGCAAGAACCGACCACGGTGGCCACGACGCAGCAGGCCATGATGCAACAGGAGATACTGATGCCGCTCATTTTGCCGCTCACAGTCACCCTCACCGACGTAGGGGATGAGGTGATACTACCCGAAGGCACAAAGATATTCACCACTTCCTAA
Protein Sequence: MDLKTKQMRELLEPLQQQISKLHSLLTNVSINSSEILVTKSTLFEQLHSLTQRFKNLASNDNCDHEEANVKFIDTATNSKHISPLKDIDELIKDLKSNDINKHTTELLLNNFTLALRALEDLECLPLKQRLQDCLDYVREMSTANEIEDLQNIKELGTSILEVLEPLQKYRRSLVSAFLSEKLALYSSQLCTSFEMLVQLAQEQHRLNAPIYASKKYICERMCTCCEMILNLLNGSNPSLEEETFEKENHFVYRMDLALDIILEMSNKTHQEQLSECAELWLRLENVFSHAMAITQVCQLYNFKAITGSCQSIVLEYEKLKQQLLSETPDPALNNLFMHTLTDALYRLERKVNIAVLTLAMEVFSNPYAALRKLVMTCGNSLSAKTRSKSDLKNLIEDFDQLFDQTMQIGIFAIACCKDMNRNNKIRNCLAGFESLETELISAITSFYLHPDNKEMRSSVKLLTTQWQREMNKFQNVVNLIINSAAFCEIVMDSLQERITAISDCLDNRQPVTQLQVQGIVQRASTLSSQVTTIVNDIGIENIDRHTIMMTRELKAAIFEANKAAKTLLIENATEPQQLRVIKRCELILNVVQRLHPVLCIIMNNTTHEKSVRTQGDSSHGISNIVNFPSTIYGLPRDENSIVYIRTPYTVKAYKSQVSIQSANSIMPKPSDLSYLIPYIRSGRTLRSEHSIMYNTPHKNKDAIEPVVKSDISLRNLSSIRQHLFSRDSFKVHNIDISEDSMDLTAILEKITLSSTSGHATFASCKSLKAQNMSSESANKEIASNTTVEKLSGTVKRETKNCANKSAITEKVRDCTISGGGDASLVMETCQKLNSVQLSSNKIQKLTLEKQEMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRNRFVGGIIKEELFLNEVEIHLDADCDRNDIEEMNVNTDYESTVAVLSEESDVDKNFLKEQLMILEDEKLTHTEEMQQDLEQDHSQEITQEVSQSIVEEQQELVDTKDNDMSSTINESRNQKLCMNENIIPSYIEAIPTEEHDYIMQQQCVLPAEQFPLQESIQMDTQVEQSIVECQETLSEFNQENQVEQIEENEAEQIEENQAEQIQEYQVEQIQEYQAEQIEETQVEQIQETQLEQIQETQVEQIQENQSEQNQTDDKKFFNEEMSTTDNEPAVGQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKALSLKKTPEKPQKMQTNISATKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDGNTSDRECRRRTRRGSTADGNDDATTSDNEHDKRRKRNRVEFACDKCPEKFDTKRSLQKHSLTHVSFKCNLCHDEYDSLEQLRNHRTKHVIEGVLTEQDLEEDMKQMMAKSVENYDDEDNKNDEEEEDNDGEFIEHAKELKCQKCPMTFSRKKLLSRHMEAAHSGTNSYDCKICRQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDATPKKYNCKKDLECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKATSEKKETQKSNNMTGDNDDDDDDSDFESGLDWPMDSHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQAQPQQQQQQPQQVQIQVQQQPQSIRMHQTTLGQAQIVKAQSIKTIAIARQEPTTVATTQQAMMQQEILMPLILPLTVTLTDVGDEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -