Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.38 3.8e+03 -0.8 0.1 2 6 6 10 6 12 0.88

2 6 0.55 5.5e+03 -1.3 1.1 15 19 77 81 76 81 0.82

3 6 0.044 4.4e+02 2.2 0.2 4 10 111 117 110 118 0.94

4 6 2.7e-05 0.27 12.4 8.1 4 18 128 142 127 143 0.96

5 6 1.3 1.3e+04 -2.6 0.5 6 10 169 173 168 173 0.83

6 6 2e-09 2e-05 25.6 17.2 1 18 179 196 179 197 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.38	3.8e+03	-0.8	0.1	2	6	6	10	6	12	0.88
2	6	0.55	5.5e+03	-1.3	1.1	15	19	77	81	76	81	0.82
3	6	0.044	4.4e+02	2.2	0.2	4	10	111	117	110	118	0.94
4	6	2.7e-05	0.27	12.4	8.1	4	18	128	142	127	143	0.96
5	6	1.3	1.3e+04	-2.6	0.5	6	10	169	173	168	173	0.83
6	6	2e-09	2e-05	25.6	17.2	1	18	179	196	179	197	0.98

Coding Sequence: ATGTCAACGGTATTAGGACGACATGATTGCGTGAAGGAAGCCACGGAGGCCAGTTGGACTTCGCCGCAGAAACTGACAATTGAAGATTTGCCGTTCGAGTCTCTTATTAAGGAAGGACATATCAAGCAAAGCGAGTACGTTTGGTCCTGCAATAACTGTTACCATGTATTGCACCTAAAATGCATCAAAAAATGGGCGAAATCGTCTCAGAGAGTGAACAGTTGGAAGTGCCCAGCCTGCCGGGACATTATTAGTTTTCTCATACCGAAGGAGTATTTCTGTTTCTGTAGGAAGAGGAAGATGCCGGAGTGGAATCGCAGGGACGTGGTTCACTCGTGCGGCGAGATCTGCGGTCGTAATCTGTCCAAGAACAATTACACGCACAAATGTACCCTGCTCTGCCATCCCGACTCATGTCCGCAGTGCGTGGCGATGGTGACCAAGTATTACGGCTGCGGAAGAATGTCGAAGATGCTGCTATGCAGCGCTCACCAACTGTTGCAGTGCGATTCGATATGCGAAAAAGATCTGTCGTGCGGCAAGCACACTTGTCAGAAAAAATGCCATCAGGGAGAGTGCGGGCCTTGCGACAAGACCGTGCGACagaAACATCTACTCAGTTTGGCTGATCAATTTGCCAAGGAAGATAACAAACAATATGCTTCTGAATGGGATATAAATGAAACAGCGGACGAAATCTGGCTGTATGAGTTTGAAATGAGACATTAA
Protein Sequence: MSTVLGRHDCVKEATEASWTSPQKLTIEDLPFESLIKEGHIKQSEYVWSCNNCYHVLHLKCIKKWAKSSQRVNSWKCPACRDIISFLIPKEYFCFCRKRKMPEWNRRDVVHSCGEICGRNLSKNNYTHKCTLLCHPDSCPQCVAMVTKYYGCGRMSKMLLCSAHQLLQCDSICEKDLSCGKHTCQKKCHQGECGPCDKTVRQKHLLSLADQFAKEDNKQYASEWDINETADEIWLYEFEMRH

Sequence clustering based on sequence similarity using MMseqs2