Basic Information

Insect: Lasius fuliginosus
Gene Symbol: SCRT1
Assembly: GCA_949152495.1
Location: OX424453.1:2850852-2853646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.6e-06 0.0007 21.0 3.4 1 23 489 511 489 511 0.98

2 5 0.03 4.7 9.0 0.2 2 23 521 542 520 542 0.94

3 5 1.5e-06 0.00022 22.6 0.4 1 23 546 568 546 568 0.97

4 5 4.8e-08 7.4e-06 27.2 0.6 3 23 576 596 574 596 0.98

5 5 4.5e-06 0.00068 21.1 1.1 1 21 602 622 602 623 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.6e-06	0.0007	21.0	3.4	1	23	489	511	489	511	0.98
2	5	0.03	4.7	9.0	0.2	2	23	521	542	520	542	0.94
3	5	1.5e-06	0.00022	22.6	0.4	1	23	546	568	546	568	0.97
4	5	4.8e-08	7.4e-06	27.2	0.6	3	23	576	596	574	596	0.98
5	5	4.5e-06	0.00068	21.1	1.1	1	21	602	622	602	623	0.95

Sequence Information

Coding Sequence: ATGATTCCCGCAGAGTGTCCCGACACGCAACCAATGACTTCCGTCGTGCCCGATGCTAAGCCCTTGAAGGAGGAAGCATCGAGCGACGCGAGCGCGAGCACCATgtcaacgacgacgacgacgacgacgacgacgacggcgacgacagCAGCGTCagcgtcatcgtcgtcgtcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcgtcatcgtcgtcgtcgtcgttatcCGTTATCTCCACGGATGCAATATCCGCGACGGACTGCTCGATGACAATGCGAATGGAGACGACCACCGTGATCACCGTGACGCCGTGCACCACGACGACGGCTCCGTCGCCGGCGGAATCGATCGTCTCTCCCGTCGAGaaagcgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgatcgtTCCATCCTTACCTCCGCCGAGCGTCGCGCGAACGTCCACCGGGAGACCCGAAACCGCGATCGCGACGACGTCCATCGCGATGCTGTACCATCCAACGTCCGTCGGAGAATCGTCTTCCGTCGTCTCCGGCACGTCGACGACGCCCTGTCACCTGGACGACGCTCCGGAGCACTCGAGGACAGCCAACGACTTCAGGATACGACTCGCCCCCGCGTCCTGCGGCGTGCTCATGCCCAGCCACGTGTCGTCCATGTTCAAGGACCGTTCCGCGGCGGAGACGGAGGCGGCGCACGATCTTCTCGAGCTGTCGCGATCGTTGCCGCCATTGCCGCCGCCGAGCGTCGCGATCGGTCCTCAGAGCGTGATCGAGGCGCCGGCGAGCGACGTCCAGGAGATGACGGTGTACCAACCGGCCGAGCAGCCGATTTATCAGGTGAACACGATCGATCTGGCCGGCTCGACCATCTACggccatcatcatcatcatcagcaacaaccgcagcagcagcagcaacaatcCGCCGCGGCCGCCGGCATCATCTACGAGCCCAGCGCGACTATCGTGCCACCCTCGGGCAGCGTCTTCATACCTCTGTCGCCGGTACAGGAGATTCTACTCACGTACAGCACGTCCACAATACCTTGCACGTCGATCGTCGCTCAGCAGCCGCAGCATCAGCCGCTGCCGCTTCCAccgcagcaacagcagcaacaacaatcgcagcaacagcagcagcagcagcagccgtTGCAACAGCAACAGATCGAGACGACGCCGCCGTTGACGCCACCGACTTCCGAGTGTAGTAGCGACATCGAGAACAGCAACCCGAACTCGCAGCCGACGCAGAGGGACAAGGAGGTGCAGACCATCACCGAGCAGACGGAGGGAGTGAAGCCGGCCAGTTATACGTACGACACGTTGCTCGTCTCGGACGGAAGGTCGAAGAACAAGAAGGCGCCTCCCGTGCAGGAGACCGAACCGCCCGAGGCGCCCGAGACCTCCAAGACCGGTCGTTATATGTGCTGCGAGTGCGGCAAACAATACGCGACCTCGTCGAACCTGTCGCGGCACAAGCAGACGCATCGCAGCATCGACTCGCAATCGGCCAAGAAGTGCATCCACTGCGGCAAGGCTTACGTCAGCATGCCCGCCCTGGCGATGCACGTGCTCACGCACAAGCTCACGCACAGCTGCGGCGTATGCGGCAAGATGTTCTCGCGACCCTGGCTGCTGCAGGGTCATCTGCGCAGTCACACCGGCGAGAAGCCGTACGGATGCGCCCACTGCGGCAAGGCGTTCGCCGATCGCTCGAATCTGCGGGCGCACATGCAGACCCACTCGGCCGACAAGAACTACGAGTGCCCCAAGTGTCACAAGTCGTTCGCGCTCAAGTCTTACTTGAACAAGCACCTGGAGTCGGCGTGCCAGCGCGAGAACGAGAACGAGAGCAGCTACGACGTCGACGCGCCGTCATAA
Protein Sequence: MIPAECPDTQPMTSVVPDAKPLKEEASSDASASTMSTTTTTTTTTTATTAASASSSSSSSSSSSSSSSSSSSSSSSSSSLSVISTDAISATDCSMTMRMETTTVITVTPCTTTTAPSPAESIVSPVEKATTTTTTTTTTTTTTTTTTIVPSLPPPSVARTSTGRPETAIATTSIAMLYHPTSVGESSSVVSGTSTTPCHLDDAPEHSRTANDFRIRLAPASCGVLMPSHVSSMFKDRSAAETEAAHDLLELSRSLPPLPPPSVAIGPQSVIEAPASDVQEMTVYQPAEQPIYQVNTIDLAGSTIYGHHHHHQQQPQQQQQQSAAAAGIIYEPSATIVPPSGSVFIPLSPVQEILLTYSTSTIPCTSIVAQQPQHQPLPLPPQQQQQQQSQQQQQQQQPLQQQQIETTPPLTPPTSECSSDIENSNPNSQPTQRDKEVQTITEQTEGVKPASYTYDTLLVSDGRSKNKKAPPVQETEPPEAPETSKTGRYMCCECGKQYATSSNLSRHKQTHRSIDSQSAKKCIHCGKAYVSMPALAMHVLTHKLTHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNYECPKCHKSFALKSYLNKHLESACQRENENESSYDVDAPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264544;
90% Identity: iTF_00869139; iTF_00868334;
80% Identity: -