Basic Information

Gene Symbol
-
Assembly
GCA_949152495.1
Location
OX424444.1:1189589-1199676[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 8.5e-06 0.0013 20.2 1.0 1 23 264 286 264 286 0.98
2 32 0.012 1.9 10.2 3.7 1 23 309 332 309 332 0.96
3 32 0.00014 0.022 16.3 0.5 2 23 339 361 338 361 0.96
4 32 0.0042 0.64 11.7 0.1 1 21 381 401 381 402 0.95
5 32 0.0029 0.44 12.2 0.1 2 23 499 520 498 520 0.94
6 32 0.0074 1.1 10.9 0.4 2 23 527 549 526 549 0.91
7 32 0.00012 0.018 16.6 0.1 1 23 619 642 619 642 0.96
8 32 0.015 2.3 10.0 1.2 1 23 648 671 648 671 0.95
9 32 0.084 13 7.6 0.8 1 23 684 706 684 706 0.97
10 32 4.8e-05 0.0074 17.8 0.9 3 23 751 772 750 772 0.96
11 32 2.1 3.2e+02 3.2 0.4 1 23 805 828 805 828 0.92
12 32 0.29 44 5.9 1.1 2 23 835 858 834 858 0.90
13 32 1.2 1.9e+02 3.9 0.0 2 23 867 889 867 889 0.90
14 32 0.025 3.8 9.3 0.0 2 23 896 918 895 918 0.93
15 32 1.8e-05 0.0027 19.2 1.2 1 23 926 948 926 948 0.98
16 32 0.016 2.5 9.8 1.6 2 23 992 1015 991 1015 0.95
17 32 0.0057 0.86 11.3 1.0 1 23 1018 1041 1018 1041 0.97
18 32 0.00093 0.14 13.7 0.1 2 23 1048 1070 1047 1070 0.95
19 32 0.0012 0.19 13.4 3.9 1 21 1098 1118 1098 1119 0.95
20 32 0.0036 0.56 11.9 1.8 2 23 1133 1154 1132 1155 0.93
21 32 0.49 74 5.2 1.1 1 23 1158 1181 1158 1181 0.94
22 32 0.014 2.1 10.0 0.9 2 23 1188 1211 1187 1211 0.90
23 32 4.1 6.3e+02 2.3 0.2 2 23 1219 1241 1219 1241 0.94
24 32 4.4 6.7e+02 2.2 0.0 2 23 1248 1270 1247 1270 0.88
25 32 0.31 47 5.8 2.7 2 23 1279 1301 1279 1301 0.96
26 32 0.94 1.4e+02 4.3 0.5 2 23 1307 1329 1306 1329 0.91
27 32 0.023 3.4 9.4 0.1 1 23 1391 1414 1391 1414 0.95
28 32 0.00026 0.039 15.5 1.9 1 21 1442 1462 1442 1463 0.96
29 32 0.43 66 5.4 1.9 2 23 1563 1585 1562 1585 0.94
30 32 1.2 1.9e+02 3.9 0.4 2 23 1592 1614 1591 1614 0.94
31 32 0.94 1.4e+02 4.3 2.5 1 23 1625 1647 1625 1647 0.97
32 32 0.23 35 6.2 0.1 1 19 1651 1669 1651 1672 0.91

Sequence Information

Coding Sequence
ATGGCGACGATATTGACGACAACGATggcgatgacgacgacgacgacgacgacgacttcGTCGTTGGCGGTTACTACGACGAAGGGCATGATGGCGATGCCGAGGGAGCGGAGGAAATCTTATCACGATCTCTGTCGCCTGTGCGCCTCTCACGACAACGCCAGCATGCACATATTCGGCGAGGAAGGCATAAACCGGCAGCTAGTTGACAAAATCCAGACGTGCCTGCCATTCAAGATAGAGGAAGATGATCGTTTGCCGAAAGTCCTGTGTTATCGATGCATGTacaatttggaaaatttttacgACTTCAGAACTGCGTGCGTGAACGCGGCTGCTTGGTTGGAAAGAAATAGGCCCAAGGAAGGCGCGAACGATGACGGTGCAAATGATAGCGCGCAGTGCAGCGAGATGCACGCGGAGCTTCTCAAGGGAAAGGAAAATATGCCAATACTTATCCCGGAGGCGCCCGTGGTTAATCCGAACGCCGCATTAGGTACACCGCCGAGATTGAATTCTGACGGTGAGGCCGATCCCGAGATCGAAGAGATTCTCGACGCGAGCGAAGGTACGGACGAAGTGCTCGACGACTCGACGGAGGATCGACGATCGGAATACGAATACGAGATGGACATGGAGACGAATCCCAGCGACTTCTTGGAAATGACGCCGATGGTAACCGAGGAAAACGAGGAAGAGTGCGTCGCGAACAATACGAGTGTCCCGACCGGGGGTCAACAACAAGACGCCGCGGCGGTCTTTCCACCTACGTCTCAGCAGCACGAGGTCTATGTATGCTCTCTGTGCAACAAGGCATTTAGCTCCAAGGGTCATCTGTCGTTGCACGCGAGGATTCACGTGGGCGAGGGTGATGTGATCGGCGAAAGAGTCATTACCGATGACCACACCTCATATCAGCGACCGTACCAATGCGATCTCTGTCACAAATCGTATTCTACCGCGAAGCATCGCTGGGGACATGTTTCTACGACACATCGGGGACATCCTGCGGTAACGTGTGCGTACTGCTCGCGCATATACTCGACGCGATACAACCTCGAGGAGCATATAAAATCGCGACACGCCGGTCTACCGCCACCCACGGAATTATCGGTTTCCCTTTCCCGTGCGGAGACTCGTTATCAATGCCAAACGTGTCCGATGGTTTATAAAGATCTGGCAGACTTCAACGCGCATCGTCAGATATGCGAGGAACAACGCACTGATCTATTGGGGCAAACTGACGCGCAGAACAATAAGAGTTTGGTCGATGTGTCCGATATGTCGAGTATTATAGACTCGGACGACGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCGCAATTGACTATATTGAAACAAGCGTTGACTAAAGGAGACAGTTTAAAACGGAATTACGACGATGATGGTTCAACGTCGAGTTGCAAGACGAGAAAAATGGTCAAGATAgAAGGTGAGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGACGGTCTAAAGTTGCACGAAGTTAGGCATGATGCCGAGAAGCCGTTTATCTGCATACTATGCAAGAAGGATTTCGTTTTGAAATCTTCATTGATAAGGCACATTACGACGATACACGGCGTCGATCCTACTCCTATTATTGACAGCGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTCAGCGTTTACGAGCAGAGCGAAATAAAGGAACCACCGGAGTTTTCGTCGTCACCCGAgGTAAATTTGGACAATGATGACAAAGACTCGAAAAACAATCACGAGAATATAGAAATTGAAACAGTATTTATATGTGAGATTTGTACAAGGGACTTTAATGATCGAGCGTCGTTATGGTTGCACATGCGTGCAACGCATAAGGAACTTGCTGCATTCGCCTGTGGAGTGTGTTTAAAGATTTGTTCCGATAATACACAACTCCAGAGTCATCTCTACATGTACCACGAAAAATCCAAGCTTTTAATATCAGAACAAAGAAGGTACAGCTGCACAATATGCGGCAGACAGCATGATTCAAGAAAGAAGCTAATCGCTCATGTCTCGATTCACAATATCGATTCTGGATTTGATCCTGCaatttttgtacaattaaACAGTAATTACTATAACGAGAACTTAAACGGTGCCGAAGGAAATGAGCAAGTAATGGATTTTGATGGAGAAGACGGCGAGAAAGTCGATTGTTACATTTGTTATAAATCTTTTCCAAACGAGGATCATCTTATACGACATCAGAGAAATGCGCATAAGTCCGAACAGATAATTCCGTTGGGAGACGCCGCGGGAAGTGGAAACGCTGCGAATGTCAACGGCAATGGTAATAGGGCGCAGTATCATTTGTTTTTCGTTTGCGAAATTTGCGGTAGTTCTCATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAACATGCATAGTAATGAATCTTCCATCAAGTGCGAATATGAAGACTGTGGGAAGATATTCGCAACGAAATTGTTGCGCAATGACCATTTTCAGCATCATTTGATTCAAGGCCCGTCGCCGAACACCTGCGAGATATGCGGGAAATTATGGCCTACTCGTGTCGATTACTGGAAACACGTGATGGGCGTCCACGCGGACATGGTGCCCCTAATCTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTGGTGCAGTTAAGTGCCCATGTTAAGGCGAAACATTGGCCACTGACCAGTGGTGATTTCAGCTGTGATATTTGCGGTAGACCGTATTCCAACAAATCGAAGATGTCCCGGCATAGAAAGATCCACGGTTTGGAGGTGGCAGCAGCGGCGGCGGTAGCTGCGGACGTCGCGTGTGATAATAGCAACCTCAACGAGACAACCAACGAATTGATCAAGCTCGAACACGGCAACAACAGGGCTGTAGACGTCAAATTGAAATGCGAACAGTGCCCCGAGCACAAGTTTACGACTCTGGACAGTTTACGCAATCATCGTCGGGTAGTGCACAATCTCTTCCCGTGCGATCTATGCGTTAAGTATTATGGTAGGACGTCGCACTTGTGGAAACATGTGAACAGGGTACACAAGGGTCACCCGGACGTGACTTGTCCATACTGTGCGAAAACGAGCGCGTCGAGGGATCATCTGGCGGCGCACATCGCGAAGATTCACAGGTACGTACCCACGATGGGTGGCAAGGACAGTCAGAACTGCGTCGTTTCCAAGTCCTTGAGTGTGGAAGATGGTGTCCTGCATTACTGCGAGAAGTGTAACAAGGGATTCCACAAGCGCTACCTGCTCCGACGTCATATGAAGGGCTGCCAAAATTACCGTAAGGATCCTGGAGCATTGTTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTGCAGAAGCACATCGAGAATCATCATAGCACGTATACCTGCCATTTGTGTAACGAGACCATCACTTCCAAGCTGGGCATCATGACACACAATCGCGTCAATCATATGGATCATCCGGATTTGACATGCGACAATCCGAGCTGTAAGAAACTCTTCCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAGTATCACAGCAATCCGAACGTCTGCGATTTTTGCGGTGACACCGTGGAGAACAAACTCAAGTTGAAGATGCACGTGCTATCATTACACCGGAACGAGATCGGCGTGTCCTGCGGCGTCTGTCTCATTCCTATGAAGGATCCGAAAGATTTGAAGAAACATGTCGAGGCGGAGCACAGCAGCGTTCTTTCCAATCCGAATACATGTCAGGTATGTGGCAAGCAGTACGCGTCCAAGTGGAAGGCTTTCGATCACACGAAGAAATGTCACGGAAAAGTTTTTCTCACGTGCAAACAGTGTTTAGCAGTTTTCACGGACGAGAACGATATACGCGATCACTACGAACACGTGCACAACGTTCCAAAGGACCAATTAGCCGTTTTCGAATATAGAATGGACATCGGTGCGAAAAGGGAAGATTACGAGACGCCCGATATCATCGTGAAGGAGGAACCGGACGATCTCGAGTTTGACGAGGAGATGTGCGACGAGAGCTCGACTGATTCCCGCAAACGTAGACGATCCCCGAATGATACGTACGATTGCGAAATGTGCCCCGAGATCTTCCTCAATTCGGACACACTCGCCAAGCATTATCAGAACGTTCACAACACCGATCCCGTCCGTATGTTCAAGAAGTTTAAGAAGAGCAACGGCGACGGCAAACGTAAAATGAGAAACAGAAACAATTATGAATGCAAGAATTGCAAGAAGCACTTCTCCACCAAGACCCTATTTTGGAATCACATCAACGCGTGCACGCGACGAAACTCGGTATGTAGATTCGACGCCCCGAATAATATCCCGACATCGATTCTGGAGTCGCATCTGAAGAACAATAATCAGATTCAGCGAGAGGAACCGATGCCGCTGACGAACGAATCCAATTTGAACATTCCTGACTTCAATCTGTTCGAGGACATCAATCTGCAATTGTCGGCCCAGAAACCGGTCCCGAATCTCATGCCGTTGCCGCAGAAGTCGGCGGGTAATGGCAAGTGCTCGCGCAAAGACTCGCGCAAGGTGTACGACGAGTCGACCAATACCGAGTGCACGTGCGAGGTCTGCGGCAAACAGTGGCCCGCCAAGAAACACTTGTGGCAACATCTCATTCGCTTCCATCGCGCTGAAGCTGCCGTTACTTGTGGAGTGTGCTTGAAGCTATGCAAATCCTATCAAGACCTGGCCGATCACCTGAAGGCCGAGCACGCCCCTGTCTTGTCGCCGGAGGGCAACAATTTCACGTGCAAGACGTGCGGTAGATATCACAACGCGAGAAGTAAACTGCTCTTGCACATGAGCATTCATATCGGGTACTTCCGGTGCGAGAAGTGCCAGCAAGGTTTCGCGAGTGAGGAGAAGCTCGGCGAGCACGCGACGAGCTGCAACGGCAAATCGGAATTTGAGGATCACGCGGTGACGGCGGATATCGAAGATAACGCGAAAAACGACAACGATGAAAAGGGTAGTTTGATCGCTGACGAAACGTCGGTCATCGAAGAGGAAGTTGAAGAAGCGGATTTCGAATCGGAGGGCGAAGGTAGTAGAAGCATCCAAAACGAAGAGAACAATAGCGAGGAAGATAATTCGGATAGCGATGACTCGGATAGCGGTAGCAATAGTAGTTCGAGCGAGAACGAGGGCGAAGAGgacgaggaagaagaagaggaagagcaggaagaagaagaagaggagaatGAAAACGAGTCTGACACGAGGACTGAACCGGACACGAGAACTACGAGCAGAGCGAGCGGTGACAGTGGATCGTGTAATTCCGAAAGCGACGAATCGGATATGGATGAAGCAGGAGTGCGCACGATGCAGAAGAAAGCGCCGCGATTGGACGATATCGATAGGTTCAGGATACACGACGAAGAGAACTCGTCGGTGATGGAGAAGTACGAGGATCAGAGGACCGCTTCCGTTATCGCAACGACGGATGCAGACCAAAATAAACAGAGTAATTTGAATAACCTACTGATTCCCGGCGCACCTACGAACGTAGACAAATTTAAGGCATTGCGTCTTCAGGAATCCACTGTAGCTATAGCGAGTGATGTAGACTTTTCTAATGATAACGAAAATGATAATGAGGAAGATGATGAAGAGGAAAATAATGAGaacgacgaagaagaagaggggGGTGAAGGTGAGGGTGAAGGTGATGGTGAAGGTGATGAAGGTGAAGGTGAAGGTGAAGATGaagatgaaaatgaaaatgaaaatgaagatGAAAGTGAAGATGAGGGTACAAGCGAGGCCGAGGCTGAGAGTGGAGAAGATGACGGCGAAAATGACGCTGAAGATgggggagaagaagaagaggaagaagaagaagaaggggaGGAAAATGatgaggacgacgacgacggaccGCCTGTGCTGAGTCCGATAATGCCTTTGTTACCAGAAAACGAATCCGAAGAGCACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGATATCGCTGAATATGGACAAATTGATGGAGGGATGCGAGATAACGGAGATAAAACCTGACGCGGAGAACACGGCGGCACCGTCGAACGAGTCAAATTTTTTCGCGGCTAATAACAACGATCTACCCGTGACATGGGACGAGGATGATGAACGCGATTGCGATTCCGATGCCGGAGACGGGGATGTGATGGTGGTGAAGAACGAGGAGTATGCTAAGAGGAATATGAACGATTTGGAGGGCGACGACTACGAGGAAGATTCCGCGGATGAGAATGTCATGGATGATAGAGACGGTGGTAGTGCAGATCAAGTGCACGAGATACATAGCTTAGACGGGACAGTGTTAATGATGACTAATGACGCGGAAGGTAATCCGATTTTGATACAGCATAACATGTTAGATATCGATAACGAGGACTCTAATGCCGAAGTGGCGCAGTATATTTACCCAGAGAATACTTACGAgatcgaagaagaagaagagggagaggaCGAGGACGATTTTGCGACGCAAAACGAAACCGACGCCACGCAGACGGGTGAGATACAAGATATATCTTATGTTCAGGATATGTCGGAGAACGAGGACAGCACGACGGGGGATGACGTAGAGGAGAACAGTAGTGACGCCCAGAAATAG
Protein Sequence
MATILTTTMAMTTTTTTTTSSLAVTTTKGMMAMPRERRKSYHDLCRLCASHDNASMHIFGEEGINRQLVDKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGANDDGANDSAQCSEMHAELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEECVANNTSVPTGGQQQDAAAVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLEEHIKSRHAGLPPPTELSVSLSRAETRYQCQTCPMVYKDLADFNAHRQICEEQRTDLLGQTDAQNNKSLVDVSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDSLKRNYDDDGSTSSCKTRKMVKIEGENPEIKRWYCEYCPQSFTSVDGLKLHEVRHDAEKPFICILCKKDFVLKSSLIRHITTIHGVDPTPIIDSDKCLKTSVMPQNWNRMDVSVYEQSEIKEPPEFSSSPEVNLDNDDKDSKNNHENIEIETVFICEICTRDFNDRASLWLHMRATHKELAAFACGVCLKICSDNTQLQSHLYMYHEKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGAEGNEQVMDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNAANVNGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEYEDCGKIFATKLLRNDHFQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADMVPLICGVCLKVFSDVVQLSAHVKAKHWPLTSGDFSCDICGRPYSNKSKMSRHRKIHGLEVAAAAAVAADVACDNSNLNETTNELIKLEHGNNRAVDVKLKCEQCPEHKFTTLDSLRNHRRVVHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHPDVTCPYCAKTSASRDHLAAHIAKIHRYVPTMGGKDSQNCVVSKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDNPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDLEFDEEMCDESSTDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKSNGDGKRKMRNRNNYECKNCKKHFSTKTLFWNHINACTRRNSVCRFDAPNNIPTSILESHLKNNNQIQREEPMPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLPQKSAGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGYFRCEKCQQGFASEEKLGEHATSCNGKSEFEDHAVTADIEDNAKNDNDEKGSLIADETSVIEEEVEEADFESEGEGSRSIQNEENNSEEDNSDSDDSDSGSNSSSSENEGEEDEEEEEEEQEEEEEENENESDTRTEPDTRTTSRASGDSGSCNSESDESDMDEAGVRTMQKKAPRLDDIDRFRIHDEENSSVMEKYEDQRTASVIATTDADQNKQSNLNNLLIPGAPTNVDKFKALRLQESTVAIASDVDFSNDNENDNEEDDEEENNENDEEEEGGEGEGEGDGEGDEGEGEGEDEDENENENEDESEDEGTSEAEAESGEDDGENDAEDGGEEEEEEEEEGEENDEDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMISLNMDKLMEGCEITEIKPDAENTAAPSNESNFFAANNNDLPVTWDEDDERDCDSDAGDGDVMVVKNEEYAKRNMNDLEGDDYEEDSADENVMDDRDGGSADQVHEIHSLDGTVLMMTNDAEGNPILIQHNMLDIDNEDSNAEVAQYIYPENTYEIEEEEEGEDEDDFATQNETDATQTGEIQDISYVQDMSENEDSTTGDDVEENSSDAQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_00729511;
80% Identity
-