Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: -
Assembly: GCA_028455615.1
Location: CM052323.1:8887373-8890777[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00015 0.013 16.1 0.5 1 23 103 126 103 126 0.96

2 13 0.01 0.88 10.3 4.6 2 23 254 276 254 276 0.91

3 13 0.00074 0.065 13.9 2.2 3 23 321 342 320 342 0.96

4 13 5.7 4.9e+02 1.7 7.6 3 23 429 450 428 450 0.95

5 13 0.07 6.1 7.7 2.2 1 23 499 522 499 522 0.94

6 13 0.021 1.9 9.3 2.8 2 23 570 592 569 592 0.94

7 13 0.00012 0.011 16.3 0.2 3 23 616 637 615 637 0.91

8 13 0.0074 0.65 10.8 3.6 2 23 682 704 681 704 0.96

9 13 0.1 8.7 7.2 4.2 3 23 719 740 717 740 0.92

10 13 9.5e-05 0.0083 16.7 0.1 2 23 784 806 784 806 0.94

11 13 0.047 4.1 8.3 1.6 1 23 883 905 883 905 0.98

12 13 0.002 0.18 12.5 1.0 2 23 919 941 918 941 0.96

13 13 0.0065 0.57 10.9 0.8 1 23 1015 1038 1015 1038 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00015	0.013	16.1	0.5	1	23	103	126	103	126	0.96
2	13	0.01	0.88	10.3	4.6	2	23	254	276	254	276	0.91
3	13	0.00074	0.065	13.9	2.2	3	23	321	342	320	342	0.96
4	13	5.7	4.9e+02	1.7	7.6	3	23	429	450	428	450	0.95
5	13	0.07	6.1	7.7	2.2	1	23	499	522	499	522	0.94
6	13	0.021	1.9	9.3	2.8	2	23	570	592	569	592	0.94
7	13	0.00012	0.011	16.3	0.2	3	23	616	637	615	637	0.91
8	13	0.0074	0.65	10.8	3.6	2	23	682	704	681	704	0.96
9	13	0.1	8.7	7.2	4.2	3	23	719	740	717	740	0.92
10	13	9.5e-05	0.0083	16.7	0.1	2	23	784	806	784	806	0.94
11	13	0.047	4.1	8.3	1.6	1	23	883	905	883	905	0.98
12	13	0.002	0.18	12.5	1.0	2	23	919	941	918	941	0.96
13	13	0.0065	0.57	10.9	0.8	1	23	1015	1038	1015	1038	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCATGAAACGACGATATCGGACTTGACGGAATTGGACAGCGATGGGTCGAGTTGCGGGGAGCGCAGCGACGCCAGGAAACGTCTCCGCTACGACGTCGACTCGACTGGACCGAAGAAGAGGCGGAAACAAACGACGCCCGTAAGATTCTCCTCGACACTGACGAGCGGCGTGCACGAGGAGTCGAACGAGGACGAAGAGGAGGACGAGGGCAGCGAAGGTAAGCTGTCGACGCAGTCACCCATACCGAGCCAGTCGTCGATGCGCGGCGACGACAACCCGAATAACGAGTTCCGCTGCCAGTATTGTAGTCAGTTTTTCGACAGCAAGGCTGCGTTGAACGCGCATCTCGATAGCGAGCACGGGTCCGCGGTTCGGCTAGCCGGTCCTCCGAATCGAACTGGCTCGCCGATCGACGCGATCAAAGCGGAACCGCCGCCGCAGCAACCGGACCAATCCGAGAACCTCGTGAACCTGCTCAGCGTAAAGAGCTTCGCGACCAATTGGCTAAGCGCGTCGTCGGGGCAACACGTGCCATCGCAGATGCAAACGCAAAACGAGGAGCTGTGGCCGAGTCCCGTGAACCAGCTCTCCGCGTTACCGAACCATTTGCAAACCTTGCCAGGCTTTCCCGGCGCGTTGGCGCAATATCTACCATTGCCCGCGTTCCCTTTAACCGATTCTAGCCACATAGTCCGTCCGCCGATGGGGCAGACACCGATGAGGATCTTCAATCCGGACGCGTACTGCGATCTCTGCAATAAAGAGTTTTGCAACAAGTATTTCCTAAAGACGCACAAGGCCAACAAGCACGGGATCTACGTCGACTCGCCCGGACCCAGCACGGCGGACAATAACCTCACCGGGCCGCTATATCCGGCCAACTTTCCCAACAGCATGATCAAGCTGGAACCACCCGCGACCCCGCCCGCGTCCACCGCGGCTTGCGATCTCTGCCAAAAACGCTTTAAAAACGAGGATTCGATGCGCAAGCACAAACAGAAGATGCACACCGAGCTGTCGGAACATTCGCAGGAAACGACGCAGATGATGTTCTCGCAGAACGAGGATGTTGGGGAGACCACCCCGAGGAACAGTCCGGGCGGCATGGAGACGCTTTTCAAGCAAGAGTACGGGGTAGAGCAGGAAGACGCGACGTTTATGCCAGCGCCCAGACACCTATCGCCTCAATCGATTCAGCAGGCGAGGGACGCCGGATTTAACGCTGATCGGCTGCGTCGTTTAGGAGTTATAAATCCGGAAGCGTTCTGCGAAATATGTTGTAAAGAATACTGTAACAAGTATTTCCTACGCACGCATAAAATGAAGAGGCACGGGATCTCCGTTCAGGAGAACGAGAAGTCGCCGAGCAACCCGGGATCCGCGGCTACCTGGCATCAAGTGCAGACCAGCCCATTGAATTTGATCGTGGCGGAGAGCGCGTGCAGCACGGAGTCGAACGAACGCTCGGGGGAGGATTACGAGTGCAAGACCTGCGACATACGGTTCCAAACGATCGGTTTGTACCAGGCGCACTGTCGGAAGATGCACGAGAGCGAGGAACAACAGTCGCCGAAACAGGAGAGCGACCTGGAACAGCCGGATCAACGAAACGACTCGATCTCCGAAGATCTTCAGAAGTTGCAGACGATGTTGCTGCAGTTGAACGGACTGAAGTCGGGCAAGGGCTTGTGCTGCGCCGTCTGCGGTAAAGATTGCGACAGTAGAACTGCCTTGCACATTCACATGGTGACGGAGCACGGTGCCGTCGGAGAAGACTCCAGATCCTCGCCGCAGAATAAGTCACCCTCAACCGCGACCTCCTCTTTCTGCACTCTGTGCGGCAAAGAGTACCCGAATCAAGACTCTCTCCGAAGACACGTCGCGGAGGATCATCAACCAGCAGCGAACTCGAGTTCCGTTTCCCATACACCGACACCGACGACCACATCCACGGTGACGAATTCGACACCGATCAGCCAGACGCCGACCGAGAAGAAGGTAATGTCGATGACGCCGACGTCGAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAAAGGATGCACGGTATCGAGATCGAGAACGGTGCCCAGATCGGCGGAGTGATCTGCAACATATGCAACAAGGAGTTGTGCAGCAAGTACTTCTTGCGAGTTCACAAGCACAACACTCACGGGATCGTGGACGAGAACACGCCGAGCTCGACGAAACAAGAGGCACACGAGCCGGTGAACACGGACGACGCTCTGAAGCCGGAGCATCTCGGCGATCTCAGTCACAGATACTTCACTCATTTCACCGAGGTCTGTCCCATTTGCAATAGAAGGTTCCGCAGTATCAAGTGGCTGAAGGCGCACTTGATGGGCGACCATGGAAAGATCGGCATCGACAAGTGGCGCGAGATGGAACAGCAATATCAAGCGAGCAAATCCGGCAACCGCGTATCGAACGCGGCGAGAAATCATCCGAACTCGAACCTAAAGATACCAAATGGATTTGATATTCCGCAGCAGATCAAGTCGGCCGAGTATGCCGGCCTGGGCAATCAAGTGCTGTCGAATTTGCTGGGATCATCCTCGGACGATCAACAGCTGAAAAGCTACCGTTGCTCTTATTGCAATTTCACGACGACCGTGTTACCGTTCCTTTTCCTACACGAGCGATCCCACGTGAACGCGCCGGAGAGCACGGAGAGCGAGAAATCGTTGCAGTGTCCGATCTGCTCGCAGGCTTTTCACCAGCCCGAGGTGTTGCATCAACATCTACTCACGACGCACCAGTTCCCCGCGTTGCTGTCTCATTTCCAGCCCCCGGTTCTCAATCATTTAGGGCTCGATCTGGAGAAGCTGACGGAAGCGAAAGAGAAGTTCGACCAGGAGACAAAAGACGACCGTACGGAGAGCAATCCGCAAGTCACTGCCAATCAAACGATCCCCGAATCGGTCAGGAGCCAACGACAGGAGGACACGGCGGTCCAGGTGACTCCTCAGGGTGTGTACAAGTGCGCGCAGTGCGGCTACGCGACGACCAATCTGAATCGAATCAAGAAACACGTGAGGAAGGATCACAAAACGATCGGCGGCGATCCCACGGACAGCGTGCTCGCAGAACTCAGCAAAACGCTGAAAGACGTCGCTAACAGACACAAGATGCCGGCCTGTTACGCGATGCCGCAAGATATGAATTCGAACCCCGACAAAACGATCATGCAGCCATTTTTGATAGAGGAACAAGAGATTATGCAAACCGGCGAAGAGTCCAATTCTGAGAAACGATTCGCACCAGCCTTGGTCTATTTGCCGGTGAAATCGCGGATCAGCAACACGCTGACCACCTCGTTCACCCTGAGCCCCGCTTGA
Protein Sequence: MSSTMAHETTISDLTELDSDGSSCGERSDARKRLRYDVDSTGPKKRRKQTTPVRFSSTLTSGVHEESNEDEEEDEGSEGKLSTQSPIPSQSSMRGDDNPNNEFRCQYCSQFFDSKAALNAHLDSEHGSAVRLAGPPNRTGSPIDAIKAEPPPQQPDQSENLVNLLSVKSFATNWLSASSGQHVPSQMQTQNEELWPSPVNQLSALPNHLQTLPGFPGALAQYLPLPAFPLTDSSHIVRPPMGQTPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTADNNLTGPLYPANFPNSMIKLEPPATPPASTAACDLCQKRFKNEDSMRKHKQKMHTELSEHSQETTQMMFSQNEDVGETTPRNSPGGMETLFKQEYGVEQEDATFMPAPRHLSPQSIQQARDAGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGISVQENEKSPSNPGSAATWHQVQTSPLNLIVAESACSTESNERSGEDYECKTCDIRFQTIGLYQAHCRKMHESEEQQSPKQESDLEQPDQRNDSISEDLQKLQTMLLQLNGLKSGKGLCCAVCGKDCDSRTALHIHMVTEHGAVGEDSRSSPQNKSPSTATSSFCTLCGKEYPNQDSLRRHVAEDHQPAANSSSVSHTPTPTTTSTVTNSTPISQTPTEKKVMSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSTKQEAHEPVNTDDALKPEHLGDLSHRYFTHFTEVCPICNRRFRSIKWLKAHLMGDHGKIGIDKWREMEQQYQASKSGNRVSNAARNHPNSNLKIPNGFDIPQQIKSAEYAGLGNQVLSNLLGSSSDDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNAPESTESEKSLQCPICSQAFHQPEVLHQHLLTTHQFPALLSHFQPPVLNHLGLDLEKLTEAKEKFDQETKDDRTESNPQVTANQTIPESVRSQRQEDTAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKTIGGDPTDSVLAELSKTLKDVANRHKMPACYAMPQDMNSNPDKTIMQPFLIEEQEIMQTGEESNSEKRFAPALVYLPVKSRISNTLTTSFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966247;
90% Identity: iTF_00024826;
80% Identity: -