Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: -
Assembly: GCA_028455615.1
Location: CM052325.1:5103218-5105574[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.011 16.3 2.7 1 23 294 316 294 316 0.97

2 12 0.00017 0.015 15.9 1.8 1 23 320 342 320 342 0.98

3 12 0.0013 0.11 13.1 4.0 3 23 349 369 347 369 0.96

4 12 0.00021 0.019 15.6 2.7 1 23 423 445 423 445 0.98

5 12 0.00081 0.071 13.8 1.4 1 23 450 472 450 472 0.97

6 12 0.00023 0.02 15.5 1.5 1 23 522 544 522 544 0.98

7 12 0.00029 0.026 15.2 0.9 2 23 552 573 551 573 0.97

8 12 1e-06 8.8e-05 22.9 2.1 1 23 583 605 583 605 0.96

9 12 0.00023 0.02 15.5 1.6 1 23 611 633 611 633 0.97

10 12 0.00016 0.014 16.0 0.7 1 23 639 661 639 661 0.98

11 12 4.8e-06 0.00042 20.8 2.0 1 23 667 689 667 689 0.96

12 12 8.7e-05 0.0076 16.8 0.3 1 22 695 716 695 716 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.011	16.3	2.7	1	23	294	316	294	316	0.97
2	12	0.00017	0.015	15.9	1.8	1	23	320	342	320	342	0.98
3	12	0.0013	0.11	13.1	4.0	3	23	349	369	347	369	0.96
4	12	0.00021	0.019	15.6	2.7	1	23	423	445	423	445	0.98
5	12	0.00081	0.071	13.8	1.4	1	23	450	472	450	472	0.97
6	12	0.00023	0.02	15.5	1.5	1	23	522	544	522	544	0.98
7	12	0.00029	0.026	15.2	0.9	2	23	552	573	551	573	0.97
8	12	1e-06	8.8e-05	22.9	2.1	1	23	583	605	583	605	0.96
9	12	0.00023	0.02	15.5	1.6	1	23	611	633	611	633	0.97
10	12	0.00016	0.014	16.0	0.7	1	23	639	661	639	661	0.98
11	12	4.8e-06	0.00042	20.8	2.0	1	23	667	689	667	689	0.96
12	12	8.7e-05	0.0076	16.8	0.3	1	22	695	716	695	716	0.96

Sequence Information

Coding Sequence: ATGACAGAATATTTCGATTTACCGATTAACATGGATAGAATATGCAGAATCTGCCTTACAGAGGGTACCAATCTGTCCCCTATTTTTACTATGGATCAGGACATGAACGACTTCTCGTGTCTTCCTCAAAAGATACAGATATGTGGGTCGATCGAGATCCACGAGCAAGATGGTCTACCCTCGTTAATTTGTGATATCTGTATTTACAAAGCTAGCGTTGCTCACGAGTTCAGGCAACAGTGTCAGCATTCAGATGCCAAGTTGCGAATGTATTATAATAAGCCAGCAAAGTCTACTATTGTGGACACCTGTACTCAGACAGACTTGGAGATAGAGCCAATGTTATCGAAGGAACAGGAAGTTAGTCAAGACGACTACTATGTAAAAGAAGAAATGCAGGCAGCAGCTGCTGCCAATTCTCAGGAGTACATACATAGTACCTCGTATTCGAGAGACGAGTCTGATTTGAGTACTGGTCAAATCGATATACCAAGCGATAAGTTGTTTATATGCTCGATTGGTTTTGAAGGATCCAAGGAGATTGAAAAGGAAGCCTGTATCTCGGAGAGCAATTTAGAGACTTCTCTTAGTCAAGAAGATGGCAATGACCTTCCGGAAACCATAGATATTCAGTCCAAACCAGATGAAAGTGAAGCTATCGACGATTCCAATGCGCAAGAATCTATGAAGAAACAGGATGATGAATATCTTGAGGAAAGTACACTGAATGAGAATGTTATAGAAGAAGAGAAAGTTCCACAAAAGCGTACATCTACTAGAAAATTAAAATCAGTGTCCAATAAAACTTACAGTGAAGATGAAATAGACGATAGTTATTACGATCCGAACAGCGATGGTCACGATGCTGGGGAGACAAAGTTCAAATGCAAAGTGTGCTCCAAATACTATAGTACACAGAAGGGCTTGAAAAAACACTCTCTCGTTCACGAAAAGAAATTCAAATGCGATATCTGTCTGAAAATGTTCTATAAGCAGGAGAATATGGAGACCCATAAAAAGATACACGTGTCGAAACCTCTTGCCTGTAAATTATGCCATGCGTGTTTCTCTAAGCCCCAAAGCTTCGCCCGTCACCTGAAATCCCATACGGAAAAGTTGAACAACATGATCAAAGAAATCAACACGGATGAACAGAAAGACAACAAAGAACCGAAGAAAGAAATGAAGATAGAAGACGATACAGACGATGAGACTGGCATTGTAAATGAAGTTGATTTTGTTGAATTTGAGAATGCACCTGAATTGTACAAATGTGATATTTGTAGTCAGTATTGTTCTACCCTGAAAAATCTGAAAAGACATGCACTGGTGCATGGAGATAAAAAATATTCTTGCACTGTTTGTAAGAAATGGTTCTTCAGGCCAGACACACTGAAAAAACATGCTGAGAAGCATGGCCATGGGTTATTAGACAATTTAGTGGATAACAATAAATTTTTTGACTCTGACGACGACTCCTTTCCTAGTACTGCGCAGACCAATAATTTACAAGAGAGCGAAAATGTTAAAAAAGAAGAGAGCGACGAGGATGGGTCTGGGGAGTACAAATGCCAACATTGTGATAAAATCATGGCAACGAAGAAGGGTCTCCGGCGTCATGTAGCAATGCATAAACCTAAACCCGAGCCAGTTACATGTGAAATCTGTAGGAAAGTCTGTGCTAGTCAAGCTCGCCTTGTTCTCCATCAAAGGACGCATAAGCCGAAAGAAAAAGTTCCAAGAGAATACCTGTGTCATATCTGTAGTAAAGTGTATCCAAGTAACTCTTCCCTCACCTACcatatgagaactcatactggtgtgaagccgcacgtgtgtaaaacatgtaacagcggttttactactacaaccagtttagcgaatcacatcaggattcacacaggtgataagccgtttgtctgccatgtttgtagcgcagcatttgctgtcagttcagcctttaggcgacacctgaccaggcacacaggtgaagcaaattatctatgtaaaacctgtggcaaagcattcaaaagacttagcactctaaaagaacatacttatacgcactctggtgagaaaccatatgtttgcaaaacttgtggaGCTGCATACAGTCACAGTGGAAGTCTGTTCGCTCACCAAAAGCGTTGCAGAGTTCAGTATGCCGAGGATCCTTTGCAAATGGTTGTTGAAGACCATAGACATAACGTTGCACACCATATTCATGTGAATAATGTACAATCTGCAGTACGCTCACTTGCTGTGATAGGACAAATGTTTTAA
Protein Sequence: MTEYFDLPINMDRICRICLTEGTNLSPIFTMDQDMNDFSCLPQKIQICGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPAKSTIVDTCTQTDLEIEPMLSKEQEVSQDDYYVKEEMQAAAAANSQEYIHSTSYSRDESDLSTGQIDIPSDKLFICSIGFEGSKEIEKEACISESNLETSLSQEDGNDLPETIDIQSKPDESEAIDDSNAQESMKKQDDEYLEESTLNENVIEEEKVPQKRTSTRKLKSVSNKTYSEDEIDDSYYDPNSDGHDAGETKFKCKVCSKYYSTQKGLKKHSLVHEKKFKCDICLKMFYKQENMETHKKIHVSKPLACKLCHACFSKPQSFARHLKSHTEKLNNMIKEINTDEQKDNKEPKKEMKIEDDTDDETGIVNEVDFVEFENAPELYKCDICSQYCSTLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDNNKFFDSDDDSFPSTAQTNNLQESENVKKEESDEDGSGEYKCQHCDKIMATKKGLRRHVAMHKPKPEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYAEDPLQMVVEDHRHNVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625650;
90% Identity: iTF_01071148;
80% Identity: -