Lzep017905.1
Basic Information
- Insect
- Lasioglossum zephyrum
- Gene Symbol
- -
- Assembly
- GCA_028455615.1
- Location
- CM052320.1:71161-83645[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00036 0.031 14.9 0.7 2 19 466 483 465 487 0.89 2 17 3.5e-05 0.003 18.1 3.2 1 23 493 515 493 515 0.98 3 17 0.00032 0.028 15.0 0.1 3 23 523 544 521 544 0.94 4 17 0.4 35 5.3 1.8 1 23 551 574 551 574 0.98 5 17 8.8e-05 0.0077 16.8 0.8 1 23 578 600 578 600 0.97 6 17 0.0029 0.25 12.0 0.5 1 23 606 628 606 628 0.98 7 17 0.00017 0.015 15.9 2.3 1 23 634 656 634 656 0.96 8 17 0.0027 0.24 12.1 0.1 1 17 661 677 661 678 0.90 9 17 0.0024 0.21 12.3 1.2 1 23 1193 1216 1193 1216 0.98 10 17 4.2e-05 0.0036 17.8 0.1 1 23 1222 1244 1222 1244 0.97 11 17 0.0062 0.54 11.0 3.1 1 23 1250 1273 1250 1273 0.95 12 17 0.00061 0.053 14.2 0.3 3 23 1281 1301 1279 1301 0.97 13 17 0.23 20 6.1 0.4 2 23 1308 1330 1307 1330 0.94 14 17 0.00016 0.014 16.0 2.8 1 23 1334 1356 1334 1356 0.98 15 17 0.0077 0.68 10.7 0.6 1 23 1361 1383 1361 1383 0.98 16 17 4.4e-06 0.00038 20.9 0.3 1 23 1389 1411 1389 1411 0.97 17 17 2.8e-05 0.0025 18.4 0.9 1 21 1416 1436 1416 1437 0.95
Sequence Information
- Coding Sequence
- ATGGAGCTGGGGGAGGGAGATGCGAGGATGTGTCGACTTTGCGGCCAGTACGAGAGCATGTACATCGACGTATTCAGCGACGAAGGCACCAAAAGACTTTTAGGCCTGAAAATCCACTCGAAAATCAACATTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGGAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACATGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCCGAAGTAAAGACTGAAGAAACAGCACCAAGCACATCGACAAACAATAACAACAATGACATCGACAAAAACCTTAATCCTCCAGCCAAGGAGAACGTTAGAGAAGTAGCGCAACGCGTTTCAAAAACAACAGCGAAGACTCAGAGGAATTTACGAAGTCAACATCAAGCGAACATTCACAGTAACGGTATCGCTAGCAGCGGCAGCAGTAATAGTAACAATAATGGTATCGAAGCTGCTAAAGATCAAACCACCATTGAAAGCGCAACGTTGGATAATACAGACAATATCGAAATTGTTCAGAGCACCGGAAATACTGCCACGAGATGGCTCAGAAGTAGGCAAAACACGGAAACTACTTTGACCAACGAAATAACAACCGATACACCGATCGCGAATAGGCTTAGAAGTCACGTTAGCACCGCTGCAGAGATAAGCGTGAATAGTCCTCGCATTAATTCAAGCGAGACAAGTGGTAAACAACAAGATCCTAATAACACCATACAAATCCCAACGTCTGCTTTGAACAAGCTTCTGACCATCGTGTCAAACTCGCCAAACATAGAAGTGTCCGCTAAGGAATCTCGAAGCCAAAACAACGATGCGGAAGATATTAGTTTCACGGTGGAACTGTGTAAAAAGGAGAGCGACGACATCGAGACGGTACGAGCCAGAGTATTTCCAGATCAAGGCTCTTGCTTGGTAGACGAGTCTATCGTTGGCCTTCTACAAAATCAAACTTGCGTAGAGGTGAACAGTATAATAAACACTATCCTCAGCAGCAGTCTAAAGAATGGCAGTTCGACGAAGTCAAAGGACGCAGCCGAGTTCGAGCAAAAATGGCAGGCTTCTCAGAAGCCGGAGCATCTGTTCAAGATCGACGGAGAGGAGATTCGCGTGGACGACAACGTGGAGCATATCGTGACGGATAGTCAAAATGGTTACTCGTGCAAGCTGTGTTGTAAATTCTACGAGCGCAAGGACAAATGCATGGTGCACGTGAAGACGCATCTGGGGATCAAACAGTACACGTGTATTTTATGCAACGCGAAATTCGTATGCAAGTCGGACGTGATGAAGCATATACGGTGCTCGCACACCAATCCTAGACCGATACAGTGTCCGAAATGTCCAAAGAGGTTCAAATCCAAGTTTTATCTAATGGAGCACGACAACGTGCACAAAGGCGTGAGGCCGTACGCCTGCACGGATTGCGGCCAGAGTTACCACCACAAAGTATCGTTGCAGATACACATGAAATCGCATTTACCCCCGCAGAACTTGGCTTGCGAGTATTGCGGTAAAGTGTTCCCTTATCGCACGAGATTGTTGAGCCATATCGCCAGCGTCCACCTGAAGAATCGTCGGAACTTCAGGTGCCGGTTCTGCTACAATCTCTATTCGAGTCTTTCGGTTTTAAACGAACACATCAAGACGCGTCACGCGACTACCTACACTTGCGAGGTGTGCACCAAAACGTTCAAAGTCGCGTCCAAGTACAAGGCTCACGTGTTGCAGCACACCAACCCGAAACCTTTCGTGTGCACCGTTTGCAACAATAGATACGCGTCGAAAGCATTCCTGAACGAGCATCTGCTGAAACACGAGGGCCTGAGGAAGCATATTTGCCAAAAGTGTGGCGCGAGATTCGCCCAAGCTAGTCACTTGGCCGCGCATCGGCACGTGCACGGCGAAAAGAAGCACGCTTGCCCGGAATGCGGGCGAAAGTTTAACAGACGCGACAACATGAAGATAACGGTGAACGACGGATTACCGCACGTTGTTTGCTTGCGGTGCATAGGCGCGTTGGAGTTCTTGTGCGATTTTTACAACTGTTGTCAGCTCACCCAACGCAAACTCTCCTTGCAACAGCAAGCTATCAAATACTCATCGAAAAGTACACCTAGAAGAACACCGCAAGAGGAAAACAACGCGGAATTTAACAAGGAGAATGTTCTGCCATCTTCAAGCGGAACGAAACGAAGGTGCAAAGTCGCGTCGCCCGGCAAGAAGGACCAGCCTACGAATGAAAACACATTGGACGTTAGGAAACAGTCGGCCACGAACAATGCGGGTGTTCAGGAGCAAAAGTTGCAGGAGGGACAAAGCAACGAAACCGCTTCGGCACAGGGAAATCCGTTGATAAAGGACACCTTGAAGGAAGGGTCGAAATTTTTCAACAGCTGTACAGTTCCAATGAAAAAAGGCGAAGCAAACGATAAAATAGCTTTAGCAAACCCGAAACGACTGGTAAGGGGTCAGAAACGTCAATTAAAGACACTTGGAGGAGTCTGTAAATCCTCGAACAGCGTAAAACAATCTCAGGAAGGTTCGAATGGGACGAAACACGACGAGAATCAACCTAAGAGACAGTGCCTGGGTGTAATTTGCACGAACAGCACATCGAATGTTTCGGACGAGACTGGACGCGACGCGAATCCGCGTCAGAGACAGAGTCTGGGTGTAATTTGCACGAATGGTACCTCGAACGTAACCAAGAACGCTGCGACCTTGTCGAAGCCGCAAATCGAGCTACCATTGGAGAATAAAGTAGCGACGATACCGTCGAATAAAGACTGTATTAAAAACAATGATGTAAATAAAGATTTAATCGACGACGTAGTGGAGGTGGCTTCGAAGGGCGAGTCTTCAAACGCGGAAAGAAAAGAGGACGAAAGCAAACCGATATTGATAATCGTGAAGCAAGAGGAAACAGACGTGGAAGTAATTTCCCAAGAAACTGAAAAGCCGAACCAACTGGTTTGGATACCAACCGACGTACTCACAGAGGGACAAACGATCTGCCAGGATCAAGAAATTGACGTGGAATTGTCGTTAAGGCTGAGTCCTGGACCACTCGACGATGATACGGAAAATTCGGAACTCGTCGTCACTGCTCGTACCGATTCAAATTGTACCAACCAAACCGAGAAGCCGAAGATCAGTCTGCCGTCCGAAGAACAAACGCGCGCGACCGTTATAAGATCGTCGCGGAAAAGTCCTGCACCGGTGGTCGTCAAACCGGATGTGAGCAACAACATCGAGGACACCAAAAATGATTCGAAACCCCACCGAGAGTCTTCCTGGGGTGTGCTCTCGAAAATGTTAAGCGCGGAGCAAAGAGAAGAGATCGAGACTTATTATAGAATCGACATGTCCGTAGTTAACGCGGAAGAAGTACAAAAAAATTTGACGGTAGTCGACAAGAAGGACATTCGTTGCAACATCTGCGGAAGTGTTTATCTTCGAATGGACAAGTGTCAGGTGCATATTTGGGGCCATCTGCAGATGAAACCGTACAAATGCAAAGCGTGCAACTTCGTTACGGTAACTGTCAGCAACATGCGTACCCATATCAGGAAGAGTCATTTAAAGATCAAACCGTACGAGTGTGATGTCTGCGGAAAGAATTTCACCACTTACGGTTTAATGATGGAACATATTAATGGCCACACAGGTAACCGTCCATTCAAGTGTAACATTTGCGATTATCGTTGCACGACTCGACAAATGCTGGCCTATCACAACAATGTCAACCACAAACCGATCAAGGAAGTCAATTGTAAAATCTGTGGCTTGGGACTCTATTCGAGAAGCAAATTACGCACGCACATGCTCGTTCATACGAAAGATAAAATGATCATGTGTAAAATATGCTCCGCTTATTTGTCCAACGAGAGAGCATTGGAAGCGCACCACAAAAATCTTCACACGCAAGACTATGTCTGCGACGTATGTGGCAAACATACGAAATCGAGAAAGGCTCTACACAATCATCTAAACGTACATTCCACGGGAAAGTACAAGTGTACTATATGTCCGAATGTGTACAAAAGCAGTCAAATACTGAAGGAGCATCTCTTGAAGCACGAAGGAATTAGGAAGTACACCTGCGGTGAATGTGGCAAGACATTCGGACAACTGTCTCACTTGGCTGCTCACAAAGCGGTGCACAGTGGAATTAGATACTATTGTCCTGGATGCGATAAACCTTTCAACCGTCACGACAACATGAAGATACACACGAAACGGTGTAAACCGTTCCTCGCAAATCCAGAACTGAAGAAGCTCTTATTGAAGAAAGAAAGCAAAGTAAACACGTCGACCGAAGATACGACCAGTACGGATTCTGCGTCGTCGAATTCCCAAAGTTTCATCGAGAAACAGACTGACAACGAAGAGATATCGATAAAGACTTTAGACGACAAAGAAGAGACTGCAATGAAATTAGGGTTGAATATCTCTTGCATCGAATCCCCGGACAAATCGTGGATCCGCGATAACGTGTACGAAGAGATTTGGGATCGGAAAGTTTCCAATTCGATACAATCGATACGATCCCATTACGACAGAGTCGAACAGTACAAACCATTAGTGTAA
- Protein Sequence
- MELGEGDARMCRLCGQYESMYIDVFSDEGTKRLLGLKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQHVLRDRYNLPPLTEIAEVKTEETAPSTSTNNNNNDIDKNLNPPAKENVREVAQRVSKTTAKTQRNLRSQHQANIHSNGIASSGSSNSNNNGIEAAKDQTTIESATLDNTDNIEIVQSTGNTATRWLRSRQNTETTLTNEITTDTPIANRLRSHVSTAAEISVNSPRINSSETSGKQQDPNNTIQIPTSALNKLLTIVSNSPNIEVSAKESRSQNNDAEDISFTVELCKKESDDIETVRARVFPDQGSCLVDESIVGLLQNQTCVEVNSIINTILSSSLKNGSSTKSKDAAEFEQKWQASQKPEHLFKIDGEEIRVDDNVEHIVTDSQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYACTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCTKTFKVASKYKAHVLQHTNPKPFVCTVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKITVNDGLPHVVCLRCIGALEFLCDFYNCCQLTQRKLSLQQQAIKYSSKSTPRRTPQEENNAEFNKENVLPSSSGTKRRCKVASPGKKDQPTNENTLDVRKQSATNNAGVQEQKLQEGQSNETASAQGNPLIKDTLKEGSKFFNSCTVPMKKGEANDKIALANPKRLVRGQKRQLKTLGGVCKSSNSVKQSQEGSNGTKHDENQPKRQCLGVICTNSTSNVSDETGRDANPRQRQSLGVICTNGTSNVTKNAATLSKPQIELPLENKVATIPSNKDCIKNNDVNKDLIDDVVEVASKGESSNAERKEDESKPILIIVKQEETDVEVISQETEKPNQLVWIPTDVLTEGQTICQDQEIDVELSLRLSPGPLDDDTENSELVVTARTDSNCTNQTEKPKISLPSEEQTRATVIRSSRKSPAPVVVKPDVSNNIEDTKNDSKPHRESSWGVLSKMLSAEQREEIETYYRIDMSVVNAEEVQKNLTVVDKKDIRCNICGSVYLRMDKCQVHIWGHLQMKPYKCKACNFVTVTVSNMRTHIRKSHLKIKPYECDVCGKNFTTYGLMMEHINGHTGNRPFKCNICDYRCTTRQMLAYHNNVNHKPIKEVNCKICGLGLYSRSKLRTHMLVHTKDKMIMCKICSAYLSNERALEAHHKNLHTQDYVCDVCGKHTKSRKALHNHLNVHSTGKYKCTICPNVYKSSQILKEHLLKHEGIRKYTCGECGKTFGQLSHLAAHKAVHSGIRYYCPGCDKPFNRHDNMKIHTKRCKPFLANPELKKLLLKKESKVNTSTEDTTSTDSASSNSQSFIEKQTDNEEISIKTLDDKEETAMKLGLNISCIESPDKSWIRDNVYEEIWDRKVSNSIQSIRSHYDRVEQYKPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -