Lzep015669.1
Basic Information
- Insect
- Lasioglossum zephyrum
- Gene Symbol
- -
- Assembly
- GCA_028455615.1
- Location
- CM052322.1:7151545-7159044[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.9e-05 0.0069 17.0 1.2 2 21 103 122 102 123 0.93 2 17 0.00052 0.045 14.4 0.3 1 21 126 146 126 149 0.90 3 17 0.00057 0.05 14.3 3.3 1 23 158 180 158 181 0.96 4 17 1.3e-05 0.0012 19.4 1.5 1 23 187 210 187 210 0.96 5 17 7.6e-06 0.00066 20.2 0.5 2 23 217 239 216 239 0.97 6 17 0.066 5.8 7.8 0.3 1 23 244 266 244 266 0.97 7 17 0.0029 0.26 12.0 0.1 2 23 275 295 274 295 0.96 8 17 1.5e-06 0.00013 22.4 0.1 1 23 301 323 301 323 0.96 9 17 2.7e-05 0.0024 18.4 0.1 1 23 329 351 329 351 0.98 10 17 0.0018 0.15 12.7 0.4 1 21 445 465 445 466 0.95 11 17 0.25 22 5.9 0.3 1 23 496 519 496 519 0.94 12 17 0.00017 0.015 15.9 0.9 1 23 525 548 525 548 0.95 13 17 0.086 7.5 7.4 1.9 2 23 555 577 554 577 0.91 14 17 0.068 5.9 7.7 4.3 1 21 582 602 582 604 0.95 15 17 1.7e-05 0.0015 19.1 1.1 3 23 612 632 611 632 0.97 16 17 3.1e-06 0.00027 21.4 4.8 1 23 638 660 638 660 0.97 17 17 4.5e-06 0.00039 20.9 0.5 1 23 666 688 666 688 0.98
Sequence Information
- Coding Sequence
- ATGTATTCGGATAAATGTCAGTGCCCTATGGATTCGACGGAGGAACAGAAGATTCTGAAAATCTTTACCTCGCCGTTAAAGTATTCCAATTCCGCGCTGGACCCTTTAGGGGACGTTCCAAGTATGCTCGAGTTCTCCCAGTTCAAAATCGAGAATGTGTACACCTTAGTGGACGACAAGGGATCCATCGGACACGCTCCACCGGCAGGACTAACACTGAACGTCGCTAACTATCTAGCCAAAGACGAAGCTGCAAGAAGCCAAGTTGTACCCGCACCGTACAACGGGAAAGGTCGTAAGCCTctgtactgtgatcgttgtggcaaagtgttctaccggaagacgcacatgctgaagcacatacagtcgtacaaatacacgtgcagcacgtgcgacaagccgttccgactgaagagggagttgatcatgcattccgaagcggagcacggtcATCTAGAGCTGAcggagctgtacacgtgcacggactgcagctacaagaccccaatgaagagcacgttgaggacccacattcttcggcatcacagcaccgagtactcgtacttctgcaagatctgccagcgggggttcaaggtgaagagcgacatgaaccagcacatgagactgatgcactccgccgaccgtgtaatcaaatgcaacatctgcaacgccacgttcaacaacaacacggccatgcagaatcacatgaggagcatccacaacagcttttactaccagtgcgtgcaatgcaggcgatacatggcgtcgccggagagcctcgagcaacacaggcaatggcacgcggagcagaagagcgcgagcataacgtgcccgaagtgtggcaaagtgctccgaggtcgcacactcgcggcgcacctgcgagtgcacactggccagaaacctttcacctgtccgatctgcgggaaatccttccgcaggctcagtcccatggagagacacgttgtcatacatactggtaaaaagccgtacgtctgcgacgtttgcgggcaaatgttcgcgcaaaggcccggcctgctctcccacaggaaacgacatcctggaccactgccacctctgccagtagtgtccattaaaagcatagttagagacttcatcGTGGCGTACAGCTGCGTGAAACACGATTTGCTGAACGATCCTTTGGTGGATCCTCTGATGGATCCAGACTACAAACAAGCTGCAGCGAACCTTGCGAATTGCTTCTCTCTGTGGGAATGCAAAGTAGAAGACACTGATAACGATCGGTCATCGCTGAATCAAAACGTGCCGACGCCATCAAAGATGTCATCGAAGATGAGATTAAAGGGATGGGAACGCTTCGAATGCGATTACTGCAAGAAACAGTTCTTTCGCAAGGGTTCGGTGGCGTTGCACGTGAGATTGTGTAAGGGACGCAAGATCGGCGAGTCGGATTTTCGGTCGTGGTACGATGGGAAGATACGGCTCGACAAGAAATGCGTGCCACACGAGTATCGGTGCACGGTCtgcgagttcagaggcaaggacaagttgacggtgaaggagcacatcatcaacgatcacagtagtactgtaccctacaaatgcacgatgtgcgacgagggtttcaggctgaagaacgaactgaggcagcacgtatatgtgaaacacaccgattcggcgccttcctcttgcgacgtttgcggaaagtttttcaaatggggacacactaagagggcacacatgagaaacatgcacaacaatccaaatttcaagtgcagaatatgcaaacgtaacatgtacaccaagaacaacttggagcagcacatgctttgccacgagaaggtggatcaggtagcgtgtcccttgtgtggcatgacttttaaacgggaaaggcaactcgcgaaccatatgcacaaccacggagtcttcaaaccgtactcctgtccattatgcggcaaatcattccgcacgcatagtcacatgaagagacattttatcatacataccggtaaaaagccgtatgtctgcgacgtttgcggacaaatgttctcgcaaagacccagcctgctctcccacaggaaacgacatcctggaccactgccgcctctgccagtagtgtccattaaaaacatagttCAAGACTTCATCGATGATCACAAACGGGGAAATCGAGAAGAAATCGAGGTGAATACAAGCAACCCCTCTCTGATGACCAGAGTAATATGTGACAAATCCCAGGTCTTTTTGGGGGATGCTGTGAAAGGGTAG
- Protein Sequence
- MYSDKCQCPMDSTEEQKILKIFTSPLKYSNSALDPLGDVPSMLEFSQFKIENVYTLVDDKGSIGHAPPAGLTLNVANYLAKDEAARSQVVPAPYNGKGRKPLYCDRCGKVFYRKTHMLKHIQSYKYTCSTCDKPFRLKRELIMHSEAEHGHLELTELYTCTDCSYKTPMKSTLRTHILRHHSTEYSYFCKICQRGFKVKSDMNQHMRLMHSADRVIKCNICNATFNNNTAMQNHMRSIHNSFYYQCVQCRRYMASPESLEQHRQWHAEQKSASITCPKCGKVLRGRTLAAHLRVHTGQKPFTCPICGKSFRRLSPMERHVVIHTGKKPYVCDVCGQMFAQRPGLLSHRKRHPGPLPPLPVVSIKSIVRDFIVAYSCVKHDLLNDPLVDPLMDPDYKQAAANLANCFSLWECKVEDTDNDRSSLNQNVPTPSKMSSKMRLKGWERFECDYCKKQFFRKGSVALHVRLCKGRKIGESDFRSWYDGKIRLDKKCVPHEYRCTVCEFRGKDKLTVKEHIINDHSSTVPYKCTMCDEGFRLKNELRQHVYVKHTDSAPSSCDVCGKFFKWGHTKRAHMRNMHNNPNFKCRICKRNMYTKNNLEQHMLCHEKVDQVACPLCGMTFKRERQLANHMHNHGVFKPYSCPLCGKSFRTHSHMKRHFIIHTGKKPYVCDVCGQMFSQRPSLLSHRKRHPGPLPPLPVVSIKNIVQDFIDDHKRGNREEIEVNTSNPSLMTRVICDKSQVFLGDAVKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -