Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: Snai1
Assembly: GCA_028455615.1
Location: CM052326.1:17879110-17883992[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.8 5.9e+02 1.4 0.1 2 16 64 78 63 80 0.76

2 14 9 7.8e+02 1.1 0.0 1 23 210 237 210 237 0.78

3 14 0.01 0.87 10.4 0.1 1 23 242 264 242 264 0.94

4 14 1.5e-05 0.0013 19.3 1.2 1 23 272 294 272 294 0.98

5 14 3.6e-06 0.00031 21.2 0.2 2 23 302 323 301 323 0.97

6 14 5e-07 4.4e-05 23.9 0.7 1 23 329 351 329 351 0.99

7 14 1.9e-05 0.0017 18.9 1.9 1 23 358 380 358 380 0.99

8 14 7.7e-06 0.00068 20.1 0.6 1 23 386 408 386 408 0.95

9 14 1.2e-05 0.001 19.6 0.2 1 23 414 436 414 436 0.98

10 14 6.1e-07 5.3e-05 23.6 1.2 1 23 442 465 442 465 0.96

11 14 3.2e-06 0.00028 21.4 0.5 1 23 471 494 471 494 0.96

12 14 2e-06 0.00018 22.0 2.0 1 23 500 522 500 522 0.99

13 14 7.9e-05 0.0069 17.0 0.4 1 23 528 550 528 550 0.94

14 14 0.00025 0.022 15.4 0.1 1 23 556 580 556 580 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.8	5.9e+02	1.4	0.1	2	16	64	78	63	80	0.76
2	14	9	7.8e+02	1.1	0.0	1	23	210	237	210	237	0.78
3	14	0.01	0.87	10.4	0.1	1	23	242	264	242	264	0.94
4	14	1.5e-05	0.0013	19.3	1.2	1	23	272	294	272	294	0.98
5	14	3.6e-06	0.00031	21.2	0.2	2	23	302	323	301	323	0.97
6	14	5e-07	4.4e-05	23.9	0.7	1	23	329	351	329	351	0.99
7	14	1.9e-05	0.0017	18.9	1.9	1	23	358	380	358	380	0.99
8	14	7.7e-06	0.00068	20.1	0.6	1	23	386	408	386	408	0.95
9	14	1.2e-05	0.001	19.6	0.2	1	23	414	436	414	436	0.98
10	14	6.1e-07	5.3e-05	23.6	1.2	1	23	442	465	442	465	0.96
11	14	3.2e-06	0.00028	21.4	0.5	1	23	471	494	471	494	0.96
12	14	2e-06	0.00018	22.0	2.0	1	23	500	522	500	522	0.99
13	14	7.9e-05	0.0069	17.0	0.4	1	23	528	550	528	550	0.94
14	14	0.00025	0.022	15.4	0.1	1	23	556	580	556	580	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATTCGGAGAAAGATAGCACCCACTGTTTAATATGTAACAGTAAAGTTGGTGTGTCTACTAGGAACAGTATACGAATCTTTAGTGAGAATGCCTTTACATCATCAGAGAAACCACTTGTAGATATCATTTGTGCTGTCTTAGAAACAGATCTTAATGAAGAAAATGTACATTCTCTTGTTGTATGTAAAAAATGCTACAAATTATTTAATGAGGTTGACGAATTGGAAAGTAGACTAACAGAAGTGAAATTAGAACTGTTCAATAACTATAAAAGAACTGTACAGAAAGTATCTGACATGCAAACTGAAGAAGACTACAACGACCATGATTATATAGAAAATACAGAAAGCCAAGATGCGGAACTGGATACAGAGAAAGATGAACAAGAAGTGCAAGAGATGGAAGGAGAGGAAGAAAGATTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAACCTTCTTGCGAAACAGAAATTATACTTAACATTGAACCAATGCCTGAAACAAGTAGTACTGAAGAAAAGAAGAGGATGAAGCGATCTAAAATTCCATCAAAACTTGACGCTATCCAGGAACAAGTTATAAGCAGAGATGGTTCGGAATATACTTGTTTGCTATGTACAAACGAAGACGACAAAGCTGTCGGTGATGCAAAATCTATAATCGCGCACATGAAAAGCGTGCACGAAACTCGTTTATATATCTGTGATATATGCGGAGATGACTTTAAGAAGAGAACCGAGCTCTCTCTTCATCTTGACGATCACGTTGCTAAGGAAGATGGCGATTTTCAATGTGAAATATGTAATAGAATATTTAGTAATTTGCGTTTGTTCAGGATTCATAAACGGATACATTATCCGCAAGTAAAGTCTTGGCCTTGCGACACTTGTGGTAAAAGATACAGTTCTAAAAACTTGTTGGAGGAGCACATCAACACTCACACCGGCGTGCGACCGTATGTGTGCGAGAACTGTGGCAAAGACTTCGCTTCCAAGTATACGTACAAGGCACACATAAAAACACATGAAATTCGACCACGTCCTTATGAATGTTCACAATGTAATAAATCATTCTTAAGTCAGCAAAATCTTAATCAACACGAGAGAACTCACAATGGTGTAAAAGAGTATATTTGTCATCAATGTGGAAAGGCTTTTGGCTCACCACACAATTTAGAGGTGCACAATATAGTGCACACAGGTTACaagccttacatatgtagaatgtgtggtaaagcgtttgctcgcaaagcggaaataagagatcatgaaagaacacacactggagagaaaccgtaccaatgcgaattttgcgGGGCTACATTTAGtcaaaggtcaaatttgcaatctcataaacgtgcaacgcattacaacgacaagagatacaaatgcgacgattgcgggaaaggattcaaacgacgaagattgttggactatcacataaaagcagcgcataccggtgaaagaccgtacaaatgtgaagtttgtacggcgacattcgtgtaccccgaacactttaaaaaacatatgcgcatacatacgggagagaaaccgtatctatgcgaggtttgtggtaaagcatttaatagcagagataacaggaacgcgcatcgattcatacacagtgataagaagccttacgagtgtcttgtatgcggtatgggctttatgagaaaacccttgttgtatgctcacatgcaaactcagGGTCATCTAAACGATACTATTGTGGTTAATCAACCACGGCTCACTACTGAAGACGATCAGGTGATAACAATCCCTGAAGGCGATGTTGAGCTGCTAATGGACGAACCTGAAAATGATCAGTTGGAGGAGGCTCAACTGTATGTGACTGAGTTGAAGGATCATGTTATCATACAACAACAGAGTGAAGATCAAATGTATAATGAAGAAGATGTATTAAACATTTCTGCGGAAGAAAATGTAGCGGATGAAGAAGTAGGTCATCTCGTTGATGGAGAGATGACTTTTGTCGAAAATGACGGAATTGAGTGTAAAGAGGAGGACGCAGAGCAGGTTGAAGAAGTGTATAATTATAACGAAAGTGAAGATGGAGAAACAATAGTTGTACCAACTACCTCAGAGTACAAAGATATGGAAGGGGACGACAAGAATGCGGTTCGATTAGTACAGATTCGATTTCCAACAGCAGTGACCGCGGAAGGTCGAAGTTGGTTAAGTCTAGTACAAAATACATGA
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNSIRIFSENAFTSSEKPLVDIICAVLETDLNEENVHSLVVCKKCYKLFNEVDELESRLTEVKLELFNNYKRTVQKVSDMQTEEDYNDHDYIENTESQDAELDTEKDEQEVQEMEGEEERLEEEEEEEEEEEEEEEEPSCETEIILNIEPMPETSSTEEKKRMKRSKIPSKLDAIQEQVISRDGSEYTCLLCTNEDDKAVGDAKSIIAHMKSVHETRLYICDICGDDFKKRTELSLHLDDHVAKEDGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKRYSSKNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHIKTHEIRPRPYECSQCNKSFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPEGDVELLMDEPENDQLEEAQLYVTELKDHVIIQQQSEDQMYNEEDVLNISAEENVADEEVGHLVDGEMTFVENDGIECKEEDAEQVEEVYNYNESEDGETIVVPTTSEYKDMEGDDKNAVRLVQIRFPTAVTAEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00864116;
80% Identity: -