Lzep015670.1
Basic Information
- Insect
- Lasioglossum zephyrum
- Gene Symbol
- -
- Assembly
- GCA_028455615.1
- Location
- CM052322.1:7166768-7172329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.14 12 6.8 7.6 1 23 10 33 10 33 0.96 2 23 4.8e-06 0.00042 20.8 0.3 1 23 39 61 39 61 0.97 3 23 0.0092 0.8 10.5 3.5 1 23 67 89 67 89 0.97 4 23 0.00069 0.06 14.0 0.3 1 23 95 117 95 117 0.97 5 23 4.6e-05 0.004 17.7 4.5 1 23 123 146 123 146 0.96 6 23 0.00055 0.048 14.3 1.6 1 23 163 186 163 186 0.97 7 23 0.0094 0.82 10.4 0.6 3 23 196 216 194 216 0.95 8 23 9.9e-07 8.7e-05 22.9 0.3 3 23 224 244 223 244 0.97 9 23 0.00022 0.019 15.6 0.9 1 20 250 269 250 271 0.94 10 23 4.1e-05 0.0036 17.9 0.8 1 22 361 382 361 382 0.96 11 23 3.9 3.4e+02 2.2 0.2 1 9 417 425 417 440 0.78 12 23 0.00017 0.015 16.0 5.7 1 23 446 469 446 469 0.97 13 23 0.018 1.6 9.5 0.3 3 12 477 486 475 489 0.86 14 23 0.029 2.5 8.9 0.6 2 23 527 549 526 549 0.96 15 23 0.00013 0.011 16.3 1.1 1 23 555 578 555 578 0.97 16 23 5.2 4.6e+02 1.8 0.5 2 23 584 605 583 606 0.89 17 23 0.0002 0.017 15.7 0.5 1 23 611 633 611 633 0.98 18 23 0.0025 0.22 12.2 0.3 2 23 640 662 639 662 0.94 19 23 0.00025 0.021 15.4 1.4 1 23 683 706 683 706 0.93 20 23 0.0019 0.17 12.6 0.2 1 23 717 739 717 739 0.95 21 23 0.012 1 10.1 3.6 1 23 745 767 745 767 0.94 22 23 7.2e-07 6.3e-05 23.4 1.1 1 23 773 795 773 795 0.98 23 23 3.5e-05 0.003 18.1 0.3 1 21 801 821 801 822 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGATCAACGTCCCGAGCGATCCACGAGTGCGTGAAATGCGGCGCCTGTTTCTGCCATACAAGAAAGCTCGTGGAGCATCTGAAGAACTTGcacgggatcgataaggcgttcagctgcgacgagtgcggcaaaacgttcagaagtccgatgaacatcgctcgtcacaagctgatccacacaggtttgaaacgcttcgcctgcgacctgtgcgattacagatcgaaccagaaatcgaacctggagtgtcaccggcgaagacactcgaaggagtactcgttcgagtgcaaggaatgtggtaaaggctttttcctgaggacggagtacttggagcacgtgaacgttcacacgaggaaggaagtgcacaggtgcgagcactgcagcaagtcttatccgTACAAGAAGAACCTGATGGCGCATCTGAGGCTGCAGCACGCGAACGTTCTGCCCGTCGATTCGACGAAGAGCGAGGCGGGGCACAAGCACGTCtgcagcatttgtttgaagagcttcgcccagaaactgttgctcggcaggcacttgaagaaacagcacggattgtgcgagaagagcgagcatctgtgcgacctctgtggcgcggtgctgtcctcgaagaggaggttgatggcgcatcggcgcggccacgtgaacgagaaggtcgcgatgtgcaatctgtgcggcaaacagttcgccagcaaggagaacctcatcattcatcagcggatacatactggcgaaaagccccacgtgtgcacgcagtgtggcagaggtttcacacaaagaacctctttgatcttgcatctcagCCACCGGATCATTGATTCTATCCAGCACAAGGGTCGCAACGAATTAAGACTCAAGAGCCTCGACGTTCTTCTGGATCCAAAACACAATTTAATGAACGATCCTCTGACGGACCCTCTGAAGGATCCTGACAACAAACAAACTGCAGCGAACCGACGGTCTCGCTACCCTCTTCGAAAATACAGAATAGGAGACATTGATGACGATTTGACATCTGGTCTGGAATTGATTCGAAAGGTACGGGCGAAACCAAAGTTAAGATACGTCGGACCCTTCAAATGCGATTATTGCGAGAGAGAGTTCGATCACAAGAGTTCCTTGGCGATACACGTGAAAACTTGTAAAGTGCGTGAGATCTTCGAACAGGAGAACGCATTCTACGACCAGAGGGGACAGATCAGCAACAAGATACGGATCGACAGGAAATGCGATCCACCGATGTATCGGTGCTCGATCTGCCAGTACAGTAATACGGATAGGATGATAGTGAAGGACCACATCATCAATAATCACATCTCCACCTTGCCCTACAATTGCACGATATGCAACACATGTttcaggctgaagaccagtctgacgcagcacatgaaatacaagcacaccgatgtaacgcctaccatttgcaagatttgcgggaaagttttcaaaagGATCACTAATTCCAGCCACTGGATCACTGATCCTGTCAAGCACGAGGATTGCGACGAATTCAGAATCAAGAGCCTTGACGTTCTTCTGGATCCACTACAGAAATTCGAGGGTAACGAGAAAGTGTGCGACCTTTGCCAAGAAAAGTTTCACTTCGCGACCAGGCTGGTGGCTCACTTGAGGATCGTCCACGGTATCCACAGGCCTTTCAAGTGTGTCACCTGCGAGAAAACGTACCCGCAACAATTTATGCTGAACGCTCACGTGAAAAAGTCTCACACACCGAAAACAACCCCTTGTGGCCAGTGCAGTTTCATGGGGGTGAACGTGATCGACGTGGAGCGGCATACGAAGCGGCATCACAGAGACGTCAAGTACACCTGTGAAATCTGCAGCGAGAATTTCGTTGACAAAGACTCGATGATGACGCACACGACCATGCACAACTTTATGCAGTATCAACAGTGCAACGCTTGCGGCACCACATTCGATGACGTGGACAGTCTGAAGGAGCACAATCGACTCTATCATTACGACCCGGCGGCCTTGATCCAGGAGAAGATCGACGAGGGCGGGCAACAGTCTTcgatgcacaagtgcgacgtttgtgggaaagtctacaaatatgaatcggtgctgaaacagcacaaggtgaaggcacacggtgacacgcctaattacgagaggcgccgttacctctgcgccctttgtggcaaagaactgaaaaccgcgaagggtctccagatccataatcgttcgcatacaggcgagaaaccgtacacctgcgaggtgtgcggcaagtgtttcgcttgcgagactctgctcagaacacacaatgtgactcacacaggcgaacggaagtactcgtgcgatcagtgcggcaaagctttcactcaaagatcgacgttagtcgttcacaaacgttatcacaccggcgaacgaccctacgtttgcacccgctgcgggaaaggattcgtgacgaagaccgttttgaacactcacatgaagtcCTGTCGCTGA
- Protein Sequence
- MRRSTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDKAFSCDECGKTFRSPMNIARHKLIHTGLKRFACDLCDYRSNQKSNLECHRRRHSKEYSFECKECGKGFFLRTEYLEHVNVHTRKEVHRCEHCSKSYPYKKNLMAHLRLQHANVLPVDSTKSEAGHKHVCSICLKSFAQKLLLGRHLKKQHGLCEKSEHLCDLCGAVLSSKRRLMAHRRGHVNEKVAMCNLCGKQFASKENLIIHQRIHTGEKPHVCTQCGRGFTQRTSLILHLSHRIIDSIQHKGRNELRLKSLDVLLDPKHNLMNDPLTDPLKDPDNKQTAANRRSRYPLRKYRIGDIDDDLTSGLELIRKVRAKPKLRYVGPFKCDYCEREFDHKSSLAIHVKTCKVREIFEQENAFYDQRGQISNKIRIDRKCDPPMYRCSICQYSNTDRMIVKDHIINNHISTLPYNCTICNTCFRLKTSLTQHMKYKHTDVTPTICKICGKVFKRITNSSHWITDPVKHEDCDEFRIKSLDVLLDPLQKFEGNEKVCDLCQEKFHFATRLVAHLRIVHGIHRPFKCVTCEKTYPQQFMLNAHVKKSHTPKTTPCGQCSFMGVNVIDVERHTKRHHRDVKYTCEICSENFVDKDSMMTHTTMHNFMQYQQCNACGTTFDDVDSLKEHNRLYHYDPAALIQEKIDEGGQQSSMHKCDVCGKVYKYESVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLQIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCTRCGKGFVTKTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -