Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: -
Assembly: GCA_028455595.1
Location: CM052337.1:12264970-12267956[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.018 1.5 9.6 0.2 3 21 8 27 6 28 0.85

2 14 1.8 1.5e+02 3.3 0.0 2 20 34 52 33 54 0.90

3 14 0.91 76 4.3 0.4 1 12 234 245 234 254 0.89

4 14 0.014 1.2 10.0 3.1 1 23 364 386 364 386 0.97

5 14 0.00023 0.019 15.6 0.2 2 23 390 411 390 411 0.97

6 14 0.00064 0.053 14.2 4.9 1 23 422 444 422 444 0.98

7 14 0.036 3 8.7 0.1 1 23 463 484 463 484 0.76

8 14 0.00068 0.057 14.1 0.1 2 23 490 511 489 511 0.95

9 14 4.9e-05 0.0041 17.7 4.8 1 23 539 561 539 561 0.99

10 14 2.1e-06 0.00018 22.0 3.7 1 23 567 589 567 589 0.96

11 14 0.0011 0.093 13.4 3.9 3 23 597 617 595 617 0.97

12 14 1.5e-06 0.00012 22.5 0.8 1 23 623 645 623 645 0.98

13 14 9.3e-05 0.0078 16.8 0.2 1 23 649 671 649 671 0.99

14 14 0.00072 0.061 14.0 0.2 1 23 679 701 679 701 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.018	1.5	9.6	0.2	3	21	8	27	6	28	0.85
2	14	1.8	1.5e+02	3.3	0.0	2	20	34	52	33	54	0.90
3	14	0.91	76	4.3	0.4	1	12	234	245	234	254	0.89
4	14	0.014	1.2	10.0	3.1	1	23	364	386	364	386	0.97
5	14	0.00023	0.019	15.6	0.2	2	23	390	411	390	411	0.97
6	14	0.00064	0.053	14.2	4.9	1	23	422	444	422	444	0.98
7	14	0.036	3	8.7	0.1	1	23	463	484	463	484	0.76
8	14	0.00068	0.057	14.1	0.1	2	23	490	511	489	511	0.95
9	14	4.9e-05	0.0041	17.7	4.8	1	23	539	561	539	561	0.99
10	14	2.1e-06	0.00018	22.0	3.7	1	23	567	589	567	589	0.96
11	14	0.0011	0.093	13.4	3.9	3	23	597	617	595	617	0.97
12	14	1.5e-06	0.00012	22.5	0.8	1	23	623	645	623	645	0.98
13	14	9.3e-05	0.0078	16.8	0.2	1	23	649	671	649	671	0.99
14	14	0.00072	0.061	14.0	0.2	1	23	679	701	679	701	0.97

Sequence Information

Coding Sequence: ATGGGATCGTTGAATCTCGTTTGTCCAATGTGCTGTGGAGAGACCTTTAACAATCCACAGTCATTGAAGTATCATTTATTAAGCATGACGGACAACCTATACTGTCCTGGCTGTTCGCAACGTTCCGACTCTGTAATGGCACTTATCCAACACTTGGATCGCTGCGGGCAGACCGTCGATCAAGAGGAATCGCACAACGACAAGGAAGAGTCTACGCAAGAAATTCAACATGAATCTGAAGCGGATACAACAGTACTAATGGATACCAACGTCGAAGGTATAGATCAAAGTTTCCTAGCGACTGTGAATGATAGTGGAATTATGATAGTCGGAGGGCCTCAAACGATACAAGTTGATGAAAATGGAGAGATCAAAGTCGTAGAGAAAATGGACACCGAAGAGGCGCGTTTGGAGCAAAACTCTTTGGAGTTTAAGATGACGGAGAAAGTTCCTAGTACCGGCAATAAGGACAAGAATTCTTTGAGCCAGGATCATATAGTAACTATATCGGCAGCCGAGACGGAAGATAAGGACGGGAATAAAAATATAATTACTATTCTACCCGAGGGTTCGGAGCTTCTCGATGGTAACACAGGTGCTCTGATAAATATGGACCACATAAATGATGTAGGCGAATTAGATGAGGATGGGTTGTTACATGTGAAAGAAGAACTCTGCGAGCTAGAACCAGAAGCTGTGTACAGTTGTACCAGCTGTGATATGAGTTTCAATTCGGTCGTCGAGCATATCAAACAATATCACGACGGCCAAGAGGTGTTGCTGGAGATAGCTGATCAATTAGACGATCTTCCTACCATACCTGTAGCTAATACCCTACCGGCAGAGTCGGGAAGCGTAATGAACACGAGACAAAGGCAAAACATGAATACGCTGCGCACAGAGGAGTGCGTAGACAGCGAGGGAAGACTGTACACAAGAAAAGTTGTGCAAATAGAAAGGTTTTGGGACAGAGCCCCCGCGCAAACGTCTTTGCAGTCGACCAAGGCTCCGATGATAGAAAAGTTCTTTTCTAACGTGGAAGGAGTAAAAGTACGCGAGAAGAGATTGGCGGCATCGCCGATGAGAATGTACAGATGCAATCAGTGCCTTCAACAGTTCTCGAAATTGGGCAACTTCCGAGTGCACGCGTGTCTTCACGGCAACAATCGTTGCGACAGCTGCGATCAAACGTTCGCAACGCCGAAAGCGTTGCAACTGCACGCGAAGGTTCACGAGGGTGAACCGGACCCGAATCAAAAGACTTTTGTATGTGAAACATGCGGTACAGAGTTCTGTTCGCATAAAAGCTTGCGCTTGCATTCTCGGATGCACGCGCCGGTTAGGGCAAGACACGTTGACGCACCCGCGGGAACACCCAGCGCTACGTTCACATGTCCCGAGTGTGGGAAGACATTAGCAGAATCGTACAAGGAAGCGCACATGGCATTACACACCGGGGACTCTGTAACTTGTACAGTTTGTAACCGGAAGTTCGACTCCGCTGATAGTTTAGCGATGCATGCAGCGGTGCACACGGAGCTCAGTCAATCGCATTCACCGACGCCACCCGCGACGGAAACCTTGACCAAGGAACCCACGGAAAATCAAAAGCCTTATCAGTGCCAGCACTGTGGTCGTAGATTCACGAGACCCCACGAGAAGGTGAAGCATGAACGGATTCACACTGGGGAAAAGCCACATGCATGCGAAGTGTGCGGGAAAACGTTTCGTGTTTCGTATTGTTTGACTTTGCACATGAGGACTCATACCGGGGTAAGACCTTACGGATGCCAGCATTGCGGCAAGAGATTCAAGGCTTCCTCTGTGTACAATCATCATTTATTGACGCACGGCGACGAGCGCGCTTACACCTGCCCGTACTGTCCGAAAACGTTTAAAACGCGTGTCCAATTAGCGGGCCACAAGAACAGCCATACGAAACCGTTCCGGTGTACCGAGTGTTCCCGGCCGTTCGCATCCTTATACGCCGCGCGTGCTCACATACAGACACACAAGAAGGACAACAATTTGAAATTTAGTTGTTACGTTTGTGGTGCATCGTACGGCAGAGCGTTCGCGTTGAAGGATCATTTGAAGCAACACGGCACAGATGTATTAGCTCCGCCAGAACCAGCGAGAGAAGAAGAGGTTCACGAAGGAGAGGATTTCTTGTTGGCGGAGGAAGAAGTGGAGGACGATGAATTAGTCATTCCCTCTCCTTTGCCAGTTGAACAATCGTCAGACGCCGATGACACTGAATGA
Protein Sequence: MGSLNLVCPMCCGETFNNPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQTVDQEESHNDKEESTQEIQHESEADTTVLMDTNVEGIDQSFLATVNDSGIMIVGGPQTIQVDENGEIKVVEKMDTEEARLEQNSLEFKMTEKVPSTGNKDKNSLSQDHIVTISAAETEDKDGNKNIITILPEGSELLDGNTGALINMDHINDVGELDEDGLLHVKEELCELEPEAVYSCTSCDMSFNSVVEHIKQYHDGQEVLLEIADQLDDLPTIPVANTLPAESGSVMNTRQRQNMNTLRTEECVDSEGRLYTRKVVQIERFWDRAPAQTSLQSTKAPMIEKFFSNVEGVKVREKRLAASPMRMYRCNQCLQQFSKLGNFRVHACLHGNNRCDSCDQTFATPKALQLHAKVHEGEPDPNQKTFVCETCGTEFCSHKSLRLHSRMHAPVRARHVDAPAGTPSATFTCPECGKTLAESYKEAHMALHTGDSVTCTVCNRKFDSADSLAMHAAVHTELSQSHSPTPPATETLTKEPTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGTDVLAPPEPAREEEVHEGEDFLLAEEEVEDDELVIPSPLPVEQSSDADDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625657;
90% Identity: iTF_00226756;
80% Identity: -