Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: Snai1
Assembly: GCA_028455595.1
Location: CM052337.1:3258180-3263093[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.1 6e+02 1.4 0.1 2 16 64 78 63 80 0.76

2 14 9.4 7.9e+02 1.1 0.0 1 23 209 236 209 236 0.78

3 14 0.01 0.88 10.4 0.1 1 23 241 263 241 263 0.94

4 14 1.5e-05 0.0013 19.3 1.2 1 23 271 293 271 293 0.98

5 14 3.8e-06 0.00032 21.2 0.2 2 23 301 322 300 322 0.97

6 14 5.3e-07 4.4e-05 23.9 0.7 1 23 328 350 328 350 0.99

7 14 2e-05 0.0017 18.9 1.9 1 23 357 379 357 379 0.99

8 14 8.1e-06 0.00068 20.1 0.6 1 23 385 407 385 407 0.95

9 14 1.2e-05 0.001 19.6 0.2 1 23 413 435 413 435 0.98

10 14 6.4e-07 5.4e-05 23.6 1.2 1 23 441 464 441 464 0.96

11 14 3.3e-06 0.00028 21.4 0.5 1 23 470 493 470 493 0.96

12 14 2.1e-06 0.00018 22.0 2.0 1 23 499 521 499 521 0.99

13 14 8.3e-05 0.0069 17.0 0.4 1 23 527 549 527 549 0.94

14 14 0.00026 0.022 15.4 0.1 1 23 555 579 555 579 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.1	6e+02	1.4	0.1	2	16	64	78	63	80	0.76
2	14	9.4	7.9e+02	1.1	0.0	1	23	209	236	209	236	0.78
3	14	0.01	0.88	10.4	0.1	1	23	241	263	241	263	0.94
4	14	1.5e-05	0.0013	19.3	1.2	1	23	271	293	271	293	0.98
5	14	3.8e-06	0.00032	21.2	0.2	2	23	301	322	300	322	0.97
6	14	5.3e-07	4.4e-05	23.9	0.7	1	23	328	350	328	350	0.99
7	14	2e-05	0.0017	18.9	1.9	1	23	357	379	357	379	0.99
8	14	8.1e-06	0.00068	20.1	0.6	1	23	385	407	385	407	0.95
9	14	1.2e-05	0.001	19.6	0.2	1	23	413	435	413	435	0.98
10	14	6.4e-07	5.4e-05	23.6	1.2	1	23	441	464	441	464	0.96
11	14	3.3e-06	0.00028	21.4	0.5	1	23	470	493	470	493	0.96
12	14	2.1e-06	0.00018	22.0	2.0	1	23	499	521	499	521	0.99
13	14	8.3e-05	0.0069	17.0	0.4	1	23	527	549	527	549	0.94
14	14	0.00026	0.022	15.4	0.1	1	23	555	579	555	579	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATTCGGAGAAAGATAGCACCCACTGTTTAATATGCAACAGTAAAGTTGGTGTGTCTACTAGAAACAGTATACGTATCTTTAGTGAGAATGCCTTTACATCATCAGAGAAACCACTTGTAGATATCATTTGTGCGGTCTTAGAAACAGATCTTAATGAAGAAAATGTACATTCTCTTGTTGTATGTAAAAAATGCTACAAATTATTTAATGAGGTTGACGAATTGGAAAGTAGACTAACAGAAGTGAAATTAGAACTGTTCAATAACTATAAAAGAACTGTACAGAAAGTATCTGACATGCAAACTGAAGAAGACTACAATGACCATGATTATATAGAAAATACAGAAAGCCAAGATGCGGAACTGGATACAGAGAAAGATGAACAAGAAGTGCAAGAGATGGAAGGAGAGGAAGAAAGATTAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAACCTTCTTGCGAAACAGAAATTATACTTAACATTGAACCAATGCCTGAAACAAGTAGTACTGAAGAAAAGAAGAGAATGAAGCGATCTAAAATTCCATCAAAACTTGACGCTATCCAGGAACAAGTTATAAGCAGAGATGGTTCGGAATATACTTGTTTGCTATGTACAAACGAAGACGACAAAGCTGTCGGTGATGCAAAATCTATAATCGCGCACATGAAAAGCGTGCACGAAACTCGTTTATATATCTGTGATATATGCGGAGATGACTTTAAGAAGAGAACCGAGCTCTCTCTTCATCTTGACGATCACGTTGCTAAAGAAGATGGCGATTTTCAATGTGAAATATGTAATAGAATATTTAGTAATTTGCGTTTGTTCAGGATTCATAAACGGATACATTATCCGCAAGTAAAGTCTTGGCCATGCGACACTTGTGGTAAAAGATACAGTTCTAAAAACTTGTtggaggagcacatcaacactcacaccggcgtgcgaccatatgtgtgcgagaactgtggcaaagacttcgcttccaagtatacgtataaagcacacataaaaacacacGAAATTCGACCACGTCCTTATGAATGTTCACAATGCAATAAATCATTCTTAAGTCAGCAAAATCTTAATCAACATGAAAGAACTCACAATGGTGTAAAAGAGTATATTTGTCATCAATGTGGaaaggcttttggatcaccacacaatttagaggtgcacaatatagtgcacacaggttacaagccttacatatgtagaatgtgtggtaaagcgtttgctcgcaaagctgaaataagagatcatgaaagaacacacactggagagaaaccttaccaatgcgaattttgcggggctacatttagtcaaaggtcaaatttgcaatctcataaacgtgcaacgcattacaacgacaagagatacaaatgcgacgattgcgggaagggattcaaacgacgaagattgttggactatcacataaaagcagcgcataccggtgaaagaccgtacaaatgtgaagtttgtacggcgacgttcgtgtaccctgaacactttaaaaagcatatgcgcatacatacaggagagaaaccgtatctatgcgaggtttgtggtaaagcatttaatagcagagataacaggaacgcgcatcgattcatacacagtgataagaagccttacgagtgtctggtatgtggtatgggctttatgaggaaacccttgttgtatgctcacatgcaaactcagGGTCATCTAAACGATACTATTGTGGTTAATCAACCACGGCTCACTACTGAAGACGATCAGGTGATAACAATCCCTGAAGGCGATGTTGAGCTGCTAATGGACGAACCTGAAAATGATCAGTTGGAGGAGGCTCAACTGTATGTGACTGAGTTGAAGGATCATGTTATCATACAACAACAGAGTGAAGATCAAATGTATAATGAAGAAGATGTATTAAACATTTCTGCGGAAGAAAATGTAGCGGATGAAGAAGTAGGTCATCTCGTTGATGGAGAGATGACTTTTGTCGAAAATGATGGAATTGAGTGTAAAGAGGAGGACGCAGAGCAGGTTGAAGAAGTGTACAATTATAACGAAAGTGAAGATGGAGAAACAATAGTTGTACCAACTACCTCAGAGTATAAAGATATGGAAGGGGACGACAAGAATGCGGTTCGATTAGTACAGATTCGATTTCCAACAGCAGTGACGGCGGAAGGTCGAAGTTGGTTAAGTCTAGTACAAAATACATGA
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNSIRIFSENAFTSSEKPLVDIICAVLETDLNEENVHSLVVCKKCYKLFNEVDELESRLTEVKLELFNNYKRTVQKVSDMQTEEDYNDHDYIENTESQDAELDTEKDEQEVQEMEGEEERLEEEEEEEEEEEEEEEPSCETEIILNIEPMPETSSTEEKKRMKRSKIPSKLDAIQEQVISRDGSEYTCLLCTNEDDKAVGDAKSIIAHMKSVHETRLYICDICGDDFKKRTELSLHLDDHVAKEDGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKRYSSKNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHIKTHEIRPRPYECSQCNKSFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPEGDVELLMDEPENDQLEEAQLYVTELKDHVIIQQQSEDQMYNEEDVLNISAEENVADEEVGHLVDGEMTFVENDGIECKEEDAEQVEEVYNYNESEDGETIVVPTTSEYKDMEGDDKNAVRLVQIRFPTAVTAEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00864116;
80% Identity: -