Lpau016520.1
Basic Information
- Insect
- Lasioglossum pauxillum
- Gene Symbol
- -
- Assembly
- GCA_028455745.1
- Location
- CM052305.1:18584528-18587332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.026 3 9.0 4.8 1 23 45 67 45 67 0.99 2 13 0.00012 0.013 16.4 3.8 1 23 220 242 220 242 0.99 3 13 1.9e-07 2.2e-05 25.2 0.4 1 23 248 270 248 270 0.98 4 13 0.012 1.4 10.1 1.3 1 23 300 323 300 323 0.96 5 13 8.4 9.5e+02 1.1 1.8 1 23 329 353 329 353 0.87 6 13 8.1e-06 0.00091 20.1 0.5 1 23 358 380 358 380 0.98 7 13 0.0053 0.6 11.2 3.9 1 23 392 416 392 416 0.91 8 13 0.0036 0.4 11.7 2.6 1 23 418 440 418 440 0.97 9 13 6.4e-06 0.00073 20.4 0.2 1 23 446 468 446 468 0.96 10 13 3.4e-05 0.0039 18.1 1.2 1 23 474 496 474 496 0.95 11 13 0.0096 1.1 10.4 0.2 5 23 511 529 502 529 0.79 12 13 0.026 3 9.0 7.1 1 23 535 558 535 558 0.94 13 13 0.064 7.3 7.8 2.1 2 19 561 578 560 581 0.93
Sequence Information
- Coding Sequence
- ATGGCGCAATCGATTTTCGACGCTCTAACAGGCATGTCGCTGGACAGTCCTTCTGTACAATCATTATTGGAGTCGCAAACTCTAATAACTGAAATGGAGCAGTCAGCGATCGATCAGGACGAAGAAGATATCTTTCAGTGTGGAAAATGCAAAAGTCAGTTCACATCCCTGCACATGTTCGTATTGCACAAAAGGACTCATCAGAAATCGCAAGAGGAAACTATAGATTTAAGCCAGTTTTTGGTAAACGATGAAAATCAGACTGTACATCCGGAAAACAATGACCAAGACACATCACAATACAATCCGCAAGAAACATTTGTTCAAAATGATCAACTTAGCGAGCCAATCATACTCGAAGAATCGGACATGCTTTTTAGCATGGAGCAAGAGGGTGCTAGTTACTTTACAACAGATTCCACGTTTAGTGTTCCAATTATATTGAGTTCGGAAAGTTTGGATACTTTTGCAAACTCAACTATTCCAACAGACAATGAGCCTATGAAAGATGATTCAAACGAAGTACCTCAAGTTTTACCAAGTGATATCTCTCAGGACCCGGCTAATGATTCTTTAGAGACAGTCGATATATCGGTAGCTAGTGATACTCCATCATCGGAATTAGATACCTCTAATAATTTAACACAAAATTTGAAATACAAGTGTAGTTACTGTAACAAGCAGTTTGCAAAAAAATTTTATTGGCAGCAACATGAGCGGTCTCACACGGGGGAGAAACCATATCAATGCGTTGTATGCGGACGTGCGTTCGCACAAAAATCCAACGTGAAGAAGCACATGTCATCCCACAAAGTGTGGCCTGGCACTGCTATACACTCCCTACCCCCCCGAGGTATTGTCAACACGGCACCACCAGATGGAAGCATAGATCGTACCTATCACTGTCAGTTTTGTAAAGAAATATTCGACTCGTACAAAGCTCTAAAGGGCCACCTTATTGTCTCTCATTTAACACTGAAAGTGTACAAATGCGTGCAGAGTAGTTGTTGCATGATGTTCTCCGAATTGGAAGATTTCCTGGAGCATACGCGTAGTCATAAGAGATCAGAATACCGTTGTCACGTCTGCGGCGAGGTTTTCAATACTCTCTCTGATCTTGGACTCCATCAGTATGTCCACTCCGTCCGAAAGCAGAAGACGACAGAGAAGTATTACTGCTGCTCTGTCTGCAAGTCCTCATTCTCGAATCTGGAAGCTCTGCAGCATCACACGGAAACCACAACGCACAATTATGCTTGTCTACACTGCGGTAAAAGTTTCTTGATCGAACGATTTCTGCGGCGTCACCTGAAAACGCACGCCTCGTCCGCACGGTTCGCCTGCGAGGATTGCGGAAAGGCCTTCAAAACTGAGCAATACTTAGCCAATCATAAGTTAATACATAGCGAGGAAACACCGTTTTTGTGTCCACATTGTCCAGCCAGATTCAAACGAAAGGATCGTCTGGGTCGTCACATGCTGATCCATGATCTCACCAAGAGGTTAAAATGCCCATACAGAGGGTACTTAGGTTGTATGAGCGAGTTCTCGCGACCTGACAAATTGAAGCGCCACTTGTTGACGCATAGCAATATCAAAAGATTTAGTTGTAGTCACTGCAGTCGCAATTTCCATCGGGCACAAGCTCTCAAGCATCACGAGATGAACAAGCATGGTTTGAAATGCGAAGCTTGTTCGCACGCATTTAAAACTAAAGAGCAGTTACTGACACACAATTGCGATCAATCGAGTGAATCCAAGAAGCACACGAGCTCACAGTTACCTAAAAAAGCTTCTGGATCATTCAAACCAAGGAAACCTACTCCAAAGAGACAAACATCATCAAAGACTGCAATTGGACTCGCTGACAAAGAGAAATTCGAGAAATTTAAGGCTGACGATATACAAAGAAAATTTACCTCCGAAACGATAAAGTCTGAAGACTACAAAGACGAAGCATGTACCAAAAATGTAGAGAGTAATTCTATATCGAGAGATATCGGTTCGGCGATCGAGGCATTCATGAGATCTGATGCAGGGGACAATGAAATCAAATGCAACATTGATACATATTCGGTACAACAGATAGGCGAATAG
- Protein Sequence
- MAQSIFDALTGMSLDSPSVQSLLESQTLITEMEQSAIDQDEEDIFQCGKCKSQFTSLHMFVLHKRTHQKSQEETIDLSQFLVNDENQTVHPENNDQDTSQYNPQETFVQNDQLSEPIILEESDMLFSMEQEGASYFTTDSTFSVPIILSSESLDTFANSTIPTDNEPMKDDSNEVPQVLPSDISQDPANDSLETVDISVASDTPSSELDTSNNLTQNLKYKCSYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPRGIVNTAPPDGSIDRTYHCQFCKEIFDSYKALKGHLIVSHLTLKVYKCVQSSCCMMFSELEDFLEHTRSHKRSEYRCHVCGEVFNTLSDLGLHQYVHSVRKQKTTEKYYCCSVCKSSFSNLEALQHHTETTTHNYACLHCGKSFLIERFLRRHLKTHASSARFACEDCGKAFKTEQYLANHKLIHSEETPFLCPHCPARFKRKDRLGRHMLIHDLTKRLKCPYRGYLGCMSEFSRPDKLKRHLLTHSNIKRFSCSHCSRNFHRAQALKHHEMNKHGLKCEACSHAFKTKEQLLTHNCDQSSESKKHTSSQLPKKASGSFKPRKPTPKRQTSSKTAIGLADKEKFEKFKADDIQRKFTSETIKSEDYKDEACTKNVESNSISRDIGSAIEAFMRSDAGDNEIKCNIDTYSVQQIGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00754978;
- 90% Identity
- iTF_00862769;
- 80% Identity
- -