Basic Information

Insect: Lasioglossum pauxillum
Gene Symbol: -
Assembly: GCA_028455745.1
Location: CM052309.1:13079393-13084157[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 1.4e+02 3.8 0.1 3 23 15 35 14 35 0.94

2 14 5.7 6.4e+02 1.7 4.2 1 23 884 907 884 907 0.80

3 14 0.00081 0.091 13.8 2.2 2 23 990 1012 989 1012 0.96

4 14 0.015 1.6 9.8 0.1 2 23 1025 1046 1024 1046 0.97

5 14 1.8e-05 0.002 19.0 2.3 2 23 1049 1070 1048 1070 0.97

6 14 0.012 1.4 10.1 0.3 1 23 1076 1098 1076 1098 0.95

7 14 2.4e-05 0.0027 18.6 4.5 2 23 1105 1126 1104 1127 0.95

8 14 0.11 12 7.1 3.7 5 23 1140 1158 1139 1158 0.97

9 14 2.2e-05 0.0025 18.7 1.5 3 23 1165 1186 1164 1186 0.97

10 14 0.0015 0.17 12.9 0.3 2 20 1202 1221 1201 1224 0.91

11 14 8.2e-05 0.0092 16.9 2.7 1 23 1232 1254 1232 1254 0.99

12 14 0.0023 0.26 12.3 3.2 1 23 1260 1282 1260 1282 0.97

13 14 4.2e-06 0.00047 21.0 3.9 1 23 1288 1310 1288 1310 0.99

14 14 0.0014 0.16 13.0 6.3 1 23 1316 1338 1316 1339 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	1.4e+02	3.8	0.1	3	23	15	35	14	35	0.94
2	14	5.7	6.4e+02	1.7	4.2	1	23	884	907	884	907	0.80
3	14	0.00081	0.091	13.8	2.2	2	23	990	1012	989	1012	0.96
4	14	0.015	1.6	9.8	0.1	2	23	1025	1046	1024	1046	0.97
5	14	1.8e-05	0.002	19.0	2.3	2	23	1049	1070	1048	1070	0.97
6	14	0.012	1.4	10.1	0.3	1	23	1076	1098	1076	1098	0.95
7	14	2.4e-05	0.0027	18.6	4.5	2	23	1105	1126	1104	1127	0.95
8	14	0.11	12	7.1	3.7	5	23	1140	1158	1139	1158	0.97
9	14	2.2e-05	0.0025	18.7	1.5	3	23	1165	1186	1164	1186	0.97
10	14	0.0015	0.17	12.9	0.3	2	20	1202	1221	1201	1224	0.91
11	14	8.2e-05	0.0092	16.9	2.7	1	23	1232	1254	1232	1254	0.99
12	14	0.0023	0.26	12.3	3.2	1	23	1260	1282	1260	1282	0.97
13	14	4.2e-06	0.00047	21.0	3.9	1	23	1288	1310	1288	1310	0.99
14	14	0.0014	0.16	13.0	6.3	1	23	1316	1338	1316	1339	0.96

Sequence Information

Coding Sequence: ATGGATCTAACAAACAATGGAACATCAGGGGGTGCAGTGGCTTGTCCAGTTTGTACCCTTTATTTACGCGAGGGTATCAGCTTGCAAAGACACTTGGACACTCATCCAAAGGAACAAGTCATTGAAGCTCTTATCAAAGCTAGTTCTAATTCCACGCAGTTGCAACAAACACAGTTATCACCATCCGCGCCTCCAGCTTCACCGTCTGTACAATCACCACAAAGTACACAGCCAGTTGCACAGAATACTCATCTATCGACTCAGTCACCGTATCCTATAGGACCAATCTTTGAATGTCCACCGCCAATCGGTACCGTGATGCCACCTCAATTCGCTTCGTTCAGTTATCAACAGTTCGTGAACAATGGCACTATGATGATACCACAATACGCAATGGCTCCTCAAGCTAATCAAATGATGCAGATGCTATATAATCCATATGGTATGTACCAGCAACAACAAATACCAACCGTTCAGATGATCTCGCCAGTCACAACTATACCGAATACACCTAGAGGCAGGTCAATAGTAACTATGGCAGGTGAAACAAACGGCAGAACTGCCATTGCTATACCTGTAAATAATTCCGAGCCAAAACAAATCTTACCTGAGATTTTGCCTGAATCGGAACAAGAATCTGAACAAGTGTTACCGGACATCAATCTTCCAGTTTCACCGCCGTCGTTGAATGAAGAGAACTCTATGCATCATAACGAAAGCGACACTAGTATAGTTCAAATAGAAACTGACGAACAGGAGCCCTCTGCCTCAGGTAATGAAAATCAGCACATCATTCAGGACGAATACATTCCTAGAACATTGGCGATCACTTGTAATGTCGCGGATACCGCTGATGACGACAAAGTCGAAAGCGTGTTGCCTGATATTGATGAGAGTGAAACTTCATGTGTTGTCACTGTAGATGTTCAATGTAAACCTATGCAATACGAATCCTCGGATGCGCAAGAATATGTACACATGTACAAAGACGAAGATGATAATAATAAAGATAGTACGCCCGAAGCATTGCCAATGGCAATGCAAAAGGAAGCTGAGCAAACAACTACAGAGAAAGTTCCTTGCACAGAAGTAAACGAAACCGAAGGTACCTTGTCTCAAATACCTGTAGAAAGTGCAACTAAAGACCCAGCTCAACCTGAAGTAGAACAATTAGAACGTCTTTTAATCACCATTATGGAAAACGAGATCAATACTGAATCATATAAAAAATCTACCAATAAAATTGAGAAAAAGAAAGAGGAAGAGCAGAGAGAAGATCCGCCCTCTTCTTCTCCAGAAAGAGCAGAAAGTGTGATTCATGAAATAGTAGCTAACAGTTCCAGTGAATTCGATAACAGTTGCGAGTCCGATCTAGATATAAAAGTTAGTGAAAGTTCAGAAATCGATATAGATAGTAAAGAAGATAAGATTTTAAGTCTTTCGTATCGTTATAAAAACAGTTTGTCTGCACCTGCGTCGCCTATGCCATCAGAAATTCGTCGTTCAACCTATTCTGTTCGTTCTGTATTGGGTTCGCATGAAAACCTTAATTCTTATCCGATCGGTTTTGACGCAAACGCGTTGCAAGACGAAGAAAATTATGAAGATGAAAAAAATGAAACGGAAGACAACTTCGACGAAGCAGATATGGAAATAGAAGAAATCCAGAGTCCTCATACACCTTTCATTAAATATGGGGAGAGCACAGATAATGTTCGGTCGCATACTCCATTATCTGTGAGCAGTGGTATCTCTGTATTAAGGGTGAGGAAGGATCTCAGTAAACCGTGCTCACCCGCTTCGGTGCATTCATTTTGTCACATAGATAATGGTATAAGTCACGATGAAGAAAGTAATATAGCAATGGACGCAACACCAGAGAAAGATCCTATCGATTGCTCTTCTATGGAACAAGATGTAAAGATAGATCAGACAGAAACGTTTTTGAATGAAACTGTCGAGAAGAAAATAGAAGGAAATTCAGCATATCAATCTGTAATAACTGAACATGTGAGCTCATTTCCCACAATTTCACAACAATCATCGTCATCGTCGCATGAACCGTATACTAGCACGCCAAATAAAAGTAATCTTGTAAATCTGTCAGAATCTATAGATGTTGCGAGTAGTTCTGACTCAAAGAGTTTCCATTCCTCTAAATCAATTATACAAAAACCATCGATGGAACTACTTAGTTTAAATGAAGACGCCCATGCAGGTCCAATGAATGTTTTCGAATTTGATGGGCTTCAGATCTTAGTTCCTAGTACATTTATAAGTGATTCTTCACAAAAAGCTGTTAGTGCAACCAGTCAGCAGTCTATGGCAAGCAGCGAAGGTGGAGTAGGCGTAGACGAAGAAGTAAAGAGTATTAATATGAGAGCCGATGAAACTATGCCACCCAGGGGTGAATTATCGGAACAGGAAAGCAACGGATGCACAGAACCATCTGCTTGGCAGCTGTATGCTGGTCAGGAGTCATCGCGTATGTCTACTTCTTATGACTTGATGGCCCGTGAGAGTTGGGAAGAATCCGAAGGATCAGACAATGAAATTAGTGGACCGTTATTAGACAGTAGATCTTTAGCTACGCATTTCACATCGAGTTTATTCCTAGATCGAGACAGGAAAACTCCAACAAAACGAACGTTCAAGTGTTATCATTGTCCCGAGGTATTCGATTGTCCGAAAGAACGCAGGGTACACAGTACTACTACGCACAAAGAAGCTGGACCTAGTAGTAGCAGAGATTCCACAGATCAACCTGAGGTGAAAGATATCAAATTGCTAGACGGTCGTATGAACGCATTTGAGGAAATTTTTGTACCAGGTTTACATGTTCAACAAGTTTATCATCAACAACCGCTATTACATCAACTCCAACCGCCGCAATCATCAGACGTAACTGCGAAAGTAGAGCCTGATCAAAAGATCGAAACCTTAGTGTTACCGTCAAACATTGAGGTAGTTTGTACTCTGTGCAATCAACGATTTAGTAGTGAAAAATCGTTACAGCTACATCATAAAAGAGTACATCTCACGGAAACTTCGAAACGAGTTCGTGACAGTACCAAGTGCCAGATATGCCAAGAAGAGTTCCCCTCGGTTTTGTTGTTCAATGCACATCTGAAAATACATCCGTTAGAGTGTGGTCAATGCGGAAAGTATTTTTATAGGAAACAGAACTTCAAGTTACACATGAAACGACATTTAGGGATAAAACCGTTCCCGTGCACCGTTTGCGACAAAGCATTTTTAACGAAACAGAAGCTGGACGAGCATACCAATGGACATACTGGAAATGCACCTGTTAAATGCAATCTTTGCAATGAAACATTTCGTAGATATTCAAATTTGACTCAACACAAGAATAGACATCACCTGAACATAAAAAGGAAATTAAAGGATTATATATGCCACTGCGGCGAAGTATTCCATACAAAGAAAAAATTAGCATGGCATAAAGAGACACACGACGACAAGCCCAAAGCGTGTACGTATTGCAATGAAAGATTTATTCATATGGCCAGTCTGACCAGACACATGCGCCGTGCTCACAACAGAAGATTCGTTCCGGATGCTCAAAGGGAGAGCGAAAACGTTGAATGTCCTATATtttgctccaaggcgtttagtactaagTGGAACTTACAATTGCACAAATGGACACACGCTGCCCGTAGCACCAAACCTTTCAAGTGTAATCAGTGTAGTGCCGCATTTTACCGGCACAGCGATTATACCGCTCACATGAATTCTCATAGGAACGTGCGTCCTTATACCTGCAACTATTGCGGAGCGCAGTTTATACGAAAGTATAATTGTCTAAGGCATGTCAAAGAGCACGAGGAGAATAAAGCATACACGTGCGATGTTTGCAACAAAACATTTCATAGATCGTACTATCTGAAGGAACACTTGCGAGTGCATTCGGGCGCCAGACCATATACATGTCATATTTGTGGGAAATCAAGCGGTACGAAGTCGAACCATAACAAGCATGTTAGAATCCATCATGCGCGAGAGCCTGTAAATACCGAAAACTAA
Protein Sequence: MDLTNNGTSGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASSNSTQLQQTQLSPSAPPASPSVQSPQSTQPVAQNTHLSTQSPYPIGPIFECPPPIGTVMPPQFASFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQQIPTVQMISPVTTIPNTPRGRSIVTMAGETNGRTAIAIPVNNSEPKQILPEILPESEQESEQVLPDINLPVSPPSLNEENSMHHNESDTSIVQIETDEQEPSASGNENQHIIQDEYIPRTLAITCNVADTADDDKVESVLPDIDESETSCVVTVDVQCKPMQYESSDAQEYVHMYKDEDDNNKDSTPEALPMAMQKEAEQTTTEKVPCTEVNETEGTLSQIPVESATKDPAQPEVEQLERLLITIMENEINTESYKKSTNKIEKKKEEEQREDPPSSSPERAESVIHEIVANSSSEFDNSCESDLDIKVSESSEIDIDSKEDKILSLSYRYKNSLSAPASPMPSEIRRSTYSVRSVLGSHENLNSYPIGFDANALQDEENYEDEKNETEDNFDEADMEIEEIQSPHTPFIKYGESTDNVRSHTPLSVSSGISVLRVRKDLSKPCSPASVHSFCHIDNGISHDEESNIAMDATPEKDPIDCSSMEQDVKIDQTETFLNETVEKKIEGNSAYQSVITEHVSSFPTISQQSSSSSHEPYTSTPNKSNLVNLSESIDVASSSDSKSFHSSKSIIQKPSMELLSLNEDAHAGPMNVFEFDGLQILVPSTFISDSSQKAVSATSQQSMASSEGGVGVDEEVKSINMRADETMPPRGELSEQESNGCTEPSAWQLYAGQESSRMSTSYDLMARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCYHCPEVFDCPKERRVHSTTTHKEAGPSSSRDSTDQPEVKDIKLLDGRMNAFEEIFVPGLHVQQVYHQQPLLHQLQPPQSSDVTAKVEPDQKIETLVLPSNIEVVCTLCNQRFSSEKSLQLHHKRVHLTETSKRVRDSTKCQICQEEFPSVLLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDDKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPIFCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00962003;
90% Identity: iTF_00183443;
80% Identity: -