Basic Information

Insect: Lasioglossum pauxillum
Gene Symbol: -
Assembly: GCA_028455745.1
Location: CM052302.1:10602112-10604001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00019 0.022 15.7 3.9 1 23 79 101 79 101 0.98

2 11 0.0098 1.1 10.4 11.8 1 23 107 129 107 129 0.96

3 11 4.5e-05 0.0051 17.7 6.6 1 23 135 157 135 157 0.99

4 11 0.00036 0.041 14.9 2.3 1 23 163 185 163 185 0.95

5 11 9.7e-07 0.00011 23.0 1.9 1 23 191 213 191 213 0.97

6 11 1.1e-05 0.0012 19.6 0.1 1 23 219 241 219 241 0.97

7 11 5.9e-05 0.0067 17.3 1.6 1 23 246 268 246 268 0.97

8 11 4.6e-06 0.00052 20.8 0.0 1 23 274 296 274 296 0.96

9 11 5e-05 0.0056 17.6 0.2 2 23 308 329 307 329 0.96

10 11 1.2e-06 0.00014 22.7 2.0 1 23 395 417 395 417 0.97

11 11 8.1e-06 0.00091 20.1 4.4 1 23 427 449 427 449 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00019	0.022	15.7	3.9	1	23	79	101	79	101	0.98
2	11	0.0098	1.1	10.4	11.8	1	23	107	129	107	129	0.96
3	11	4.5e-05	0.0051	17.7	6.6	1	23	135	157	135	157	0.99
4	11	0.00036	0.041	14.9	2.3	1	23	163	185	163	185	0.95
5	11	9.7e-07	0.00011	23.0	1.9	1	23	191	213	191	213	0.97
6	11	1.1e-05	0.0012	19.6	0.1	1	23	219	241	219	241	0.97
7	11	5.9e-05	0.0067	17.3	1.6	1	23	246	268	246	268	0.97
8	11	4.6e-06	0.00052	20.8	0.0	1	23	274	296	274	296	0.96
9	11	5e-05	0.0056	17.6	0.2	2	23	308	329	307	329	0.96
10	11	1.2e-06	0.00014	22.7	2.0	1	23	395	417	395	417	0.97
11	11	8.1e-06	0.00091	20.1	4.4	1	23	427	449	427	449	0.97

Sequence Information

Coding Sequence: ATGACACCCCTTGGACCGCTACAACTTACTGCGGAAGAGTGCAATGAAATTTTAATGAAGAGAGCAGCCGCTGCCTCGAATCAAGCCAACGTGAACAACGTGGTAACAAGTCAAACGGACACCGCCGCTCACTTTGGACATGTTCTGACGCACGTCAACACCACGCAAATCGAAACAAAGGTGAAACAGCAGCAAGATATGGGGAGTCAAGTACGAGTCCCAAAAGAAAGGCCATATTCCTGTTCGGAATGCGGGAAGTCCTTCCTCCTCAAGCATCACCTTACGACGCATGCGAGGGTCCATACGGGAGAGCGACCTCATGTTTGCGTTCATTGCGGCAAAAGTTTTGCACACAAACACTGTCTTCATACTCACCTACTCCTTCATAGCGCGGATCGACCTTACCAATGTCGCGAATGTAAAAAGTCTTTTACATTAAAGCATCACCTTGTAACGCACACCAGAGTACACACGAGAGATCGGCCATTCATTTGTCAAGAGTGCGGAAGATCGTTTCCCTTAAAACGTCATCTGGTGACTCATAGTAAATTCCATTCAGGAGAAAGACCATTTGTTTGCGAAGAGTGTGGAGAATCGTTTTCGCAAAAGGATCACCTGACGATGCACTCGCGCTTCCATGGCAGTTTACATCCCTTTGTTTGTCCCGATTGTGGTGCGACTTTCCAGAGAAAGTTCGAGTTAGTGAATCACGGCCGTTTGCATGGCAGAGTTCCACACTCGTGTACTGTTTGCGGAAAGGAATTCCTCCAGAAAAGAACACTGTTGGCGCATATGCGTCTGCACACAGGAGAAACTCCGTTCGCGTGCACCGTTTGTGGAGAAGCTTTTCCTAGGAAATCCGACCTTGTTGCCCATTCTAAGATTCATAACAATAACACGAACACGGACGAGAAATCGCTAATGTGCAGGGAATGTGGATTGGACTTCTCGAATCGAGAAGCCCTTACTCTACACTTAAGGTTACATTCTGGCGATCGAACACTCGTTACCGACCTTTGTGGATTAGCGGCCGCCTTCCAGCAAACTCCTGGACACTTTCTTACCCCTAACACGTCGACGACTCATCAGATGAATGGACCCATTGGAACACCCGGTGTCAGCCATATGCACGGTGCAACGCAAACATCACCGCCAGTGGGTACAGGTCCGAAGCCAAAACCACACATTTGTCCCGATTGCGGTCGTGGGTTCGCGCAGAAACACGGTTTGTCCCAGCACCAACGGCGTCACACGGACGGCAGTTGCCACATAAGATCGCACGTGTGCGATAAGTGCGGCAAAGCGTTCTACCAGAAAAATCATTTGTTATTgcatcaacgccagcacatggacccgccgccgagcatacttcggcaacaacagaggcaagctgcccaggctgccgcccaacaggcacagcagcagcaacaagcgcaacaacagcaacaggtgcaacagcaacaagtgcaacaacaggttcaacaacaacaacaagtacaacagcaacaggtgcagcaacaacagcagcaacagccccaacaaccgcaacaacaaacgtgtacggttgacacaaaaacaatacagctgcagatacagcaacaagtgcaacaagttcaacaacaagttcagcagcaggtacaacagcaggtacagcaacaacaacagcagcagcaacaacaacaacaggcgtGCTCTGTGGACACTAAAGCAATACAGTTAAATGTCACTATGTGA
Protein Sequence: MTPLGPLQLTAEECNEILMKRAAAASNQANVNNVVTSQTDTAAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLHTHLLLHSADRPYQCRECKKSFTLKHHLVTHTRVHTRDRPFICQECGRSFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKSDLVAHSKIHNNNTNTDEKSLMCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTSTTHQMNGPIGTPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFYQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQAQQQQQVQQQQVQQQVQQQQQVQQQQVQQQQQQQPQQPQQQTCTVDTKTIQLQIQQQVQQVQQQVQQQVQQQVQQQQQQQQQQQQACSVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966154; iTF_00864787;
90% Identity: iTF_00966154; iTF_00864787;
80% Identity: -