Lpau003184.2
Basic Information
- Insect
- Lasioglossum pauxillum
- Gene Symbol
- -
- Assembly
- GCA_028455745.1
- Location
- CM052307.1:30809055-30818044[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0058 0.65 11.1 0.0 2 23 46 67 45 67 0.97 2 20 0.00068 0.076 14.0 0.7 2 23 80 101 79 101 0.95 3 20 0.0037 0.42 11.7 0.8 1 22 209 230 209 230 0.97 4 20 0.00045 0.05 14.6 3.0 2 23 251 272 250 272 0.94 5 20 0.00013 0.015 16.3 2.2 1 23 276 298 276 298 0.98 6 20 0.00013 0.014 16.3 0.5 3 23 306 326 305 326 0.97 7 20 3.3e-05 0.0038 18.1 4.5 2 23 333 354 332 354 0.96 8 20 0.44 50 5.1 5.0 1 23 363 385 363 385 0.96 9 20 0.21 23 6.2 0.2 3 23 393 412 392 412 0.95 10 20 0.72 81 4.5 2.5 3 13 420 430 419 432 0.89 11 20 0.0024 0.27 12.3 2.7 1 23 587 609 587 609 0.98 12 20 2.7e-05 0.003 18.4 0.9 3 23 619 640 618 640 0.96 13 20 6.9e-05 0.0077 17.1 3.6 1 23 646 668 646 668 0.98 14 20 0.078 8.8 7.5 0.4 1 23 672 694 672 694 0.97 15 20 3e-06 0.00034 21.4 0.9 2 23 701 722 701 722 0.98 16 20 0.0003 0.034 15.1 0.3 1 23 728 750 728 750 0.98 17 20 0.11 13 7.0 0.5 1 23 756 778 756 778 0.97 18 20 1e-06 0.00011 22.9 0.1 2 23 785 806 784 806 0.97 19 20 8.4e-07 9.4e-05 23.2 0.6 1 23 812 834 812 834 0.98 20 20 1.6e-06 0.00018 22.2 1.4 3 23 842 862 840 862 0.98
Sequence Information
- Coding Sequence
- ATGCTACCTCAGGGCCAGGAGCAATGCGAGATGACCGAGATTTTCGAACAGGAAGAAACAACAGAGGAGCTATTGATCACAGATCGCGTGCCGAAGGTCGAGGGCGACGAGATAATCATCGCCGAGAGTATCATACAGTGCAGTCTTTGCGGAGACAGCTTCGTGTCCGAACAGGCCCTCGAGATGCATCTAGAGATGCACGAGCACGGTAGCGTTCAGCTGTCGGAGGATCAACTAGTTTGCGAGCTGTGCGGCTGTAGTTTCGAGACGTGCGCTGCTCTGGAGGAGCATCAGCTGGAGCACGAGTCGGACGAGCAGGAACAAGAGCAGGAGCAAGAGCAGGAACAGCAACTGCAGTTGCAACAGGAACTGGAGGTTCAGGAGCAGGACCAAGACCAACCGCTCGATACGGCCCCGCGAATTTTTCCGAGCAGCGTGTCCGCTTCCACTTCGGCATATGTCTTGTTATCTGTTTGCAGATGCAACGTCGCGAAGCAGTCGTCCGCTGGGCCAAATCGATCTCATAAATCGTTAATGCCGAAAGCTAGAGTCTCGGTTAGCTCCGAAAACGTATCCAGTAAATCCTCGAACGTCCGGAAATCATTGCGCAATACCGAAAAGAGTTACTCGTGCGACGCGTGCCGGGAATCCTTTCCGAAGAAGATGCAGTTGTTCCAGCATCGGCGAACTCGTTGCAACGATTCGAGAATCGATTCGGCGAAAGATAGTCGGAAGGAgaccggcccgatcgagtgtaacgtctgccacaagatcttcaagaagaagaagtacctgaacgtccacaaaacgctgcacggtgcgccgcacgtctgtcacgtgtgcggcgctaaattgacttcggagtactacctgaagatccacatccgacggcacaacaaagagttcaccgagttctgcgagatctgcaacaaaggtttctacctgaaggcgaccctgaggacccacatgagcgtgcacagcgacgacaagccctgcacctgcgaggtctgtcacaagtcgttcggcaacagggtctacctgaggagtcacatgaagatccacagccaaccagagaccaggaagaggtacaagtgcgagatctgcgagtttcagacgttttatagttactgttacaaggagcatctgtcgacgcacaccggcgagagccaggtcgcctgcgaggtctgcggcaagctgatcagaagacagtacatgaagatacacattcggatacacaccggcgagaaaccggagatctgcgagttttgcgggaaagcgttcagctcgaggaaGTGCGAGGAGGTCAAGATCGAGTACACGAAAATAATCGAACCGATTAGCACGTTCGAGGGCGTGGAATTGATCAATTATCAGACCGAGGAGGTCTGTGTCGAAGAGTACGAGGAGATTAGTCACCAGGAAATAATCACGGAGACGTTAGAGTTCATTGAAGAAACGCAGATGGACGtggaatccgaacccgaaccggaacttgaacccgaaccggaacttgaacctgaacccgaaccagaacttgaactagaaggagaacttgaattagaaggggaacttaaatcggtaacagactatcaatcggaagtagaccttgaatcagaaacggacctacatctagaactagaacctggatcagaaccagaagcagacatgaaattagtgtcagagtcagaatcagagccgGCGATAACGATTAAACCGTTTCACCATGATCGCGACCCGAACAGAAAGTGTTCGGTGATctacgagtgcgacatctgcaagaagaggatacgcaagaagacgctcttcctgaggcaccggcagaaccacgagaggaacggcgatgagatcggacactgcgacgagtgtgacaagtcgttcgctgacgacgacaagctgaagaagcacataatcaaggtgcatcagaaggagaggccgtatcagtgcgtgctttgcagcaagcgcttcaagaccaaggagtttctgaagactcacctgaagcaacataacaagcggttcacatgcgacgtatgcggaatatcgaaggtgtccggctacgacctgcggctgcataagaagaagcataacgaggactacgtggcccgctgcgagatgtgcggcaagggcttctacacgaagcagactctggagagacacttgctcacgcacaccggcgagaagccgttcgtttgcagaatctgcaaaaccgcttacgcgagctccgcgtatctcggcacgcacatgaagtcgcacggcgaacgggagaagttcaaatgctcgatgtgcaacttcgagagctactggaagggcgcgttgaaagtgcacctcaagatacacagcggtgagaacctgatcagctgcgaggtctgcgggaaatcggtctccagtaaggcttacctgcaggttcacatgcgcatacacacaggcgagaaaccgcacgtgtgcgaggtatgcgggaaagccttcagcgtcaggaagtacttgatagtgcacctcagaacgcacacgggagaaagaccctacgggtgcaaggtatgccagaagagattcacgcaacagggatccctgaactcgcacatgaagtcccatatcgaaaggaagTGA
- Protein Sequence
- MLPQGQEQCEMTEIFEQEETTEELLITDRVPKVEGDEIIIAESIIQCSLCGDSFVSEQALEMHLEMHEHGSVQLSEDQLVCELCGCSFETCAALEEHQLEHESDEQEQEQEQEQEQQLQLQQELEVQEQDQDQPLDTAPRIFPSSVSASTSAYVLLSVCRCNVAKQSSAGPNRSHKSLMPKARVSVSSENVSSKSSNVRKSLRNTEKSYSCDACRESFPKKMQLFQHRRTRCNDSRIDSAKDSRKETGPIECNVCHKIFKKKKYLNVHKTLHGAPHVCHVCGAKLTSEYYLKIHIRRHNKEFTEFCEICNKGFYLKATLRTHMSVHSDDKPCTCEVCHKSFGNRVYLRSHMKIHSQPETRKRYKCEICEFQTFYSYCYKEHLSTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCEEVKIEYTKIIEPISTFEGVELINYQTEEVCVEEYEEISHQEIITETLEFIEETQMDVESEPEPELEPEPELEPEPEPELELEGELELEGELKSVTDYQSEVDLESETDLHLELEPGSEPEADMKLVSESESEPAITIKPFHHDRDPNRKCSVIYECDICKKRIRKKTLFLRHRQNHERNGDEIGHCDECDKSFADDDKLKKHIIKVHQKERPYQCVLCSKRFKTKEFLKTHLKQHNKRFTCDVCGISKVSGYDLRLHKKKHNEDYVARCEMCGKGFYTKQTLERHLLTHTGEKPFVCRICKTAYASSAYLGTHMKSHGEREKFKCSMCNFESYWKGALKVHLKIHSGENLISCEVCGKSVSSKAYLQVHMRIHTGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYGCKVCQKRFTQQGSLNSHMKSHIERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -