Basic Information

Insect: Lasioglossum pauxillum
Gene Symbol: -
Assembly: GCA_028455745.1
Location: CM052307.1:30744570-30749591[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.095 11 7.3 7.6 1 23 10 33 10 33 0.96

2 19 3.3e-06 0.00037 21.3 0.3 1 23 39 61 39 61 0.97

3 19 0.0063 0.71 11.0 3.5 1 23 67 89 67 89 0.97

4 19 0.00048 0.054 14.5 0.4 1 23 95 117 95 117 0.98

5 19 4.4e-06 0.00049 20.9 2.9 1 23 123 146 123 146 0.97

6 19 0.00035 0.039 14.9 1.7 1 23 163 186 163 186 0.97

7 19 0.0064 0.72 10.9 0.6 3 23 196 216 194 216 0.95

8 19 4.3e-07 4.8e-05 24.1 0.5 3 23 224 244 223 244 0.97

9 19 0.00015 0.017 16.1 0.9 1 20 250 269 250 271 0.94

10 19 0.02 2.2 9.4 0.6 2 23 306 328 305 328 0.96

11 19 3.2e-05 0.0036 18.2 1.5 1 23 334 357 334 357 0.98

12 19 3.6 4e+02 2.3 0.5 2 23 363 384 362 385 0.89

13 19 2e-05 0.0022 18.9 0.4 1 23 390 412 390 412 0.98

14 19 0.0019 0.21 12.6 0.4 2 23 419 441 418 441 0.94

15 19 6.4e-05 0.0072 17.2 2.1 1 23 462 485 462 485 0.93

16 19 0.0021 0.23 12.5 0.1 1 23 496 518 496 518 0.95

17 19 0.008 0.9 10.6 3.6 1 23 524 546 524 546 0.94

18 19 4.9e-07 5.6e-05 23.9 1.1 1 23 552 574 552 574 0.98

19 19 3.9e-05 0.0044 17.9 0.3 1 21 580 600 580 601 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.095	11	7.3	7.6	1	23	10	33	10	33	0.96
2	19	3.3e-06	0.00037	21.3	0.3	1	23	39	61	39	61	0.97
3	19	0.0063	0.71	11.0	3.5	1	23	67	89	67	89	0.97
4	19	0.00048	0.054	14.5	0.4	1	23	95	117	95	117	0.98
5	19	4.4e-06	0.00049	20.9	2.9	1	23	123	146	123	146	0.97
6	19	0.00035	0.039	14.9	1.7	1	23	163	186	163	186	0.97
7	19	0.0064	0.72	10.9	0.6	3	23	196	216	194	216	0.95
8	19	4.3e-07	4.8e-05	24.1	0.5	3	23	224	244	223	244	0.97
9	19	0.00015	0.017	16.1	0.9	1	20	250	269	250	271	0.94
10	19	0.02	2.2	9.4	0.6	2	23	306	328	305	328	0.96
11	19	3.2e-05	0.0036	18.2	1.5	1	23	334	357	334	357	0.98
12	19	3.6	4e+02	2.3	0.5	2	23	363	384	362	385	0.89
13	19	2e-05	0.0022	18.9	0.4	1	23	390	412	390	412	0.98
14	19	0.0019	0.21	12.6	0.4	2	23	419	441	418	441	0.94
15	19	6.4e-05	0.0072	17.2	2.1	1	23	462	485	462	485	0.93
16	19	0.0021	0.23	12.5	0.1	1	23	496	518	496	518	0.95
17	19	0.008	0.9	10.6	3.6	1	23	524	546	524	546	0.94
18	19	4.9e-07	5.6e-05	23.9	1.1	1	23	552	574	552	574	0.98
19	19	3.9e-05	0.0044	17.9	0.3	1	21	580	600	580	601	0.96

Sequence Information

Coding Sequence: ATGCGAAGGTCAacgtcccgagcgatccacgagtgcgtgaaatgcggcgcctgtttctgccacacgagaaagctcgtcgagcacctgaagaacttgcacgggatcgacaaggcgttcagctgcgacgagtgtggcaaaacgttcaggagcccgatgaacatcgctcgccacaagctgatccacacgggtctgaaacgattcgcttgcgatctctgcgattacagatcgaaccagaaatcgaacctcgagtgtcatcggcggagacactcgaaggagtactcgttcgagtgcaaggaatgcggtaaagggtttttcctgagaacggagtactcggagcacgtgaacgttcacacgaggaaggaagtgtaccgatgcgagcactgcagcaagtcttATCCGTATAAGAAGAATCTGATGGCGCATCTGAGGCTGCAGCACGCAAACGTTTTGCCCGTCGATTCGACGAAGAGCGAGGCGGTGCACAagcacgtatgcacgatttgtttgaagagcttcgcccagaaactgttgctcggaagacacctgaagaaacaacacggtttgtgcgagaagagcgagcatctgtgcgacctatgcggcgcggtgctgtcctcgaagaggaggctgatggcgcacaggcgcggtcacgtgaacgagaaggtcgcgatgtgcaatctgtgcggcaagcagttcgccagcaaggagaacctcaccattcatcagcggatacacaccggcgagaagccccacgtctgcacgcagtgcggcagaggcttcacgcagagaacctctttgatcttgcatctcagCCACTGGATCACTGATCCTGTCAAGCACGAGGATTGCGACGAATTCAGAATCAAGAGCCTTGACGTTCTTCTGGATCCAGAACAGAAATTCGAGGGTAACGAGAAAGTGTGCGACCTTTGTCAAGAAAAGTTTCACTTCGCGACCAGACTGGTAGCTCACTTGAGGATCGTCCACGGTATCCATAGGCCTTTCAAGTGTTCCACCTGCGAGAAAACATACCCGCAACAATTTATGCTGAACGCTCACGTGAAGAAATCCCACACACCGAAAACAACCCCTTGCGGCCAGTGCAGTTTCATGGGGGTGAACGTGATCGACGTGGAAAGGCATACAAAGCGGCATCACAGAGACGTCAAGTACACCTGTGAAATCTGTAGCGAGAATTTCGTTGACAAAGACTCGCTGATGACGCACACGACCATGCACAACTTTATGCAGTATCAACAGTGCAACGCTTGCGGTACCACATTCGATGACGTGTACAGTCTGAAGGAGCACAATCGACTCTATCATTACGACCCGGCGGCCTTGATGCAGGAGAAGATCGAcgagggaggccaacagtcttcgatgcacaagtgcgacgtttgtgggaaagtctacaaatacaagtcggtgctgaaacagcacaaggtgaaggcacacggtgacacgcctaattacgagaggcgccgttacctgtgcgccctttgcggcaaagaattgaaaaccgcgaagggtctcgagatccacaatcgttcgcacacaggcgagaaaccgtacacttgcgaggtgtgcggcaagtgtttcgcttgcgagactctgctcagaacacacaacgtgactcacacaggcgaacggaagtactcgtgcgatcagtgcggcaaagccttcactcagagatcgacgttggtggttcacaaacgctatcacaccggcgaacgaccctacgtttgcacccgctgcgggaaaggattcgtcacgaggaccgtcttgaacacccatatgaagtcctgtcgctga
Protein Sequence: MRRSTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDKAFSCDECGKTFRSPMNIARHKLIHTGLKRFACDLCDYRSNQKSNLECHRRRHSKEYSFECKECGKGFFLRTEYSEHVNVHTRKEVYRCEHCSKSYPYKKNLMAHLRLQHANVLPVDSTKSEAVHKHVCTICLKSFAQKLLLGRHLKKQHGLCEKSEHLCDLCGAVLSSKRRLMAHRRGHVNEKVAMCNLCGKQFASKENLTIHQRIHTGEKPHVCTQCGRGFTQRTSLILHLSHWITDPVKHEDCDEFRIKSLDVLLDPEQKFEGNEKVCDLCQEKFHFATRLVAHLRIVHGIHRPFKCSTCEKTYPQQFMLNAHVKKSHTPKTTPCGQCSFMGVNVIDVERHTKRHHRDVKYTCEICSENFVDKDSLMTHTTMHNFMQYQQCNACGTTFDDVYSLKEHNRLYHYDPAALMQEKIDEGGQQSSMHKCDVCGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCTRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00184075;
80% Identity: -