Loen005563.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- stc
- Assembly
- GCA_028455765.1
- Location
- CM052280.1:1338117-1339913[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 3e-11 2e-07 31.0 14.0 1 19 8 26 8 26 0.98 2 6 3 2e+04 -8.0 12.0 10 19 73 83 62 83 0.77 3 6 2 1.3e+04 -3.6 0.1 7 11 87 91 87 91 0.77 4 6 3 2e+04 -5.8 4.5 10 18 102 113 100 114 0.49 5 6 2.7e-06 0.018 15.2 14.4 1 16 119 134 119 145 0.84 6 6 1e-05 0.068 13.3 11.2 1 19 151 170 151 170 0.95
Sequence Information
- Coding Sequence
- ATGTGTCCTAAAACTTTGAGCTGCGGCAGACACAAATGCGAACAAACTTGTCATAAAGGAAGATGTCAACCTTGTTGGCGTAGCAGCTTCGAAGAATTATATTGCGAATGTGGAGCTGCCGTGATATATCCTCCAGTACCCTGTGGTACTAGAAGACCCGTTTGCGATAGGTCTTGTTCTCGTCAGCATTCCTGTGGGCACGAAGTGTTTCACAATTGTCATAACGAGCCTACGTGTCCTCCCTGCACCGTCCTTACGCAGAGGTGGTGTCACGGTAAACACGAGCTTCGTAAAGCTGTACCGTGTCACTTTAATGGAATTTCGTGCGGTTTACCGTGTAACAAGCCTATTTCTTGCGGTCGACACAAATGTCTCACAATTTGTCATCCTGGTCAGTGCGAAAAACCTGGACAACAATGTTCCCAACCGTGTACTATTCCAAGAGAAATGTGTGGACACATTTGCGCCGCTCCATGTCACGACGGTAAATGCCTAGATACGCCGTGCAAAGAAATGGTGAAGgtaacatgccagtgcggacatagaactacatctcgtgcttgtgccgagaattcgaaagagtatcaaagaatagcgagcagcatattagctagtaaaatggctgatatgcaactaggtcattccgttgacttggaagaggtgttcggtcaaggagcaaaaaaacagaatcagttgaaaacgcttgaatgtaacgacgaatgcaagctgatagaacgaaatcgaagattagcactaggtttgcaaattgtgaacccggatctgagtggaaaattaatgcccagatatagcgaTTTCATGAAGCAGTGGGCTAAAAAAGATCCACTCTTTTGTCAAATGGTCCACGAAAAATTGACAGAATTAGTTCAATTAGCAAAGACCTCGAAGCAAAAATCGCGCAGTTATTCGTTCGATAGCATGAATAAAGATAGACGTCATTTCATTCACGAGTCCTGCGAGCATTTTGGGTGTGAAAGTCAAGCATACGATCAGGAGCCTAAAAGAAATGTTGTTGCCACTGCTGTAAAAGATAAGTGTTGGTTGCCAAGCTATAGTTTATTAGAAATTGTGCAACGAAAAAATGGTCAGAGAAAAGTTCCTGGTCCAATGTTGAATACTTCAAAAGCTAACGGATCTGTAAAGACGATATTGTCACTGCCTACAAAAAAAGAACCAAAAAATCCAGAACCAGAAATAGACTACTTTGATTACAAAGGTTAA
- Protein Sequence
- MCPKTLSCGRHKCEQTCHKGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPVCDRSCSRQHSCGHEVFHNCHNEPTCPPCTVLTQRWCHGKHELRKAVPCHFNGISCGLPCNKPISCGRHKCLTICHPGQCEKPGQQCSQPCTIPREMCGHICAAPCHDGKCLDTPCKEMVKVTCQCGHRTTSRACAENSKEYQRIASSILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKLIERNRRLALGLQIVNPDLSGKLMPRYSDFMKQWAKKDPLFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNKDRRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRKNGQRKVPGPMLNTSKANGSVKTILSLPTKKEPKNPEPEIDYFDYKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -