Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.4 8.9e+03 -3.0 0.3 6 10 25 29 24 29 0.80

2 7 5.1e-09 3.3e-05 23.9 16.9 1 18 35 52 35 53 0.97

3 7 0.3 2e+03 -0.9 0.8 6 10 81 85 80 85 0.88

4 7 1.7e-10 1.1e-06 28.7 13.3 1 19 91 109 91 109 0.98

5 7 0.57 3.7e+03 -1.8 0.6 6 10 139 143 138 143 0.92

6 7 2.3e-06 0.015 15.4 11.1 4 18 156 170 149 171 0.85

7 7 0.66 4.3e+03 -2.0 1.6 5 10 200 205 200 205 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.4	8.9e+03	-3.0	0.3	6	10	25	29	24	29	0.80
2	7	5.1e-09	3.3e-05	23.9	16.9	1	18	35	52	35	53	0.97
3	7	0.3	2e+03	-0.9	0.8	6	10	81	85	80	85	0.88
4	7	1.7e-10	1.1e-06	28.7	13.3	1	19	91	109	91	109	0.98
5	7	0.57	3.7e+03	-1.8	0.6	6	10	139	143	138	143	0.92
6	7	2.3e-06	0.015	15.4	11.1	4	18	156	170	149	171	0.85
7	7	0.66	4.3e+03	-2.0	1.6	5	10	200	205	200	205	0.90

Coding Sequence: ATGGTTACAAGGTATTGTGGCTGCGGTAAAACATCACAAACGGTACAATGTAGCGCGCACAAGCTATTGTTGTGCGACGATACGTGCGATAAGGATTTAAATTGTGGCATGCATAAATGCGAGAAAAAGTGTCATCACGGAGAATGTCCAAGTTGCGAGAAAACAGTTGAACAAGAATGTTATTGCGGTAAAGGCAAGAGAAAAATAACTTGTCAAAGTAATATTTCGCTTACGTACTCTTGCAAAAGCGTCTGCGGTAAATTTTTAGATTGTGGTAATCATACGTGCACGAAGCTATGCCATCCAGGTGTTTGCGATCCATGTAGTTTGACCCCAGAAAAAGTGACGACTTGTTGCTGCGGCCAAACACCATTAACGGAGAAACGACTAACTTGTTTAGACCCAATTCCAGTTTGTGACAAAGTATGTTCGAAAAGTCTAAAATGTGGTCAACCGAATAATCCTCACATATGCAAAGCAACGTGTCACAAAGGGGATTGTCCTATTTGCGATTTAACTACAGACGTTAAGTGTCGTTGCGGAAACATGGATAGAGAAATAGCTTGTATGGATTTAATATCAAAAGCTGACGATGCTCGATGTGAAAAAAGATGCACAAAAAAAACGATCCTGTGGCAAACATAA
Protein Sequence: MVTRYCGCGKTSQTVQCSAHKLLLCDDTCDKDLNCGMHKCEKKCHHGECPSCEKTVEQECYCGKGKRKITCQSNISLTYSCKSVCGKFLDCGNHTCTKLCHPGVCDPCSLTPEKVTTCCCGQTPLTEKRLTCLDPIPVCDKVCSKSLKCGQPNNPHICKATCHKGDCPICDLTTDVKCRCGNMDREIACMDLISKADDARCEKRCTKKTILWQT

Sequence clustering based on sequence similarity using MMseqs2