Basic Information

Insect: Lasioglossum oenotherae
Gene Symbol: -
Assembly: GCA_028455765.1
Location: CM052287.1:135580-136863[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.024 2 9.2 1.0 1 23 95 117 95 117 0.97

2 7 0.00044 0.036 14.6 2.7 1 23 158 180 158 180 0.97

3 7 0.00013 0.011 16.3 0.6 1 23 251 273 251 273 0.98

4 7 0.0082 0.68 10.6 0.0 1 23 289 311 289 311 0.98

5 7 0.0014 0.11 13.1 1.4 1 23 337 359 337 359 0.98

6 7 0.0009 0.074 13.7 0.0 1 23 378 400 378 400 0.98

7 7 2.3e-06 0.00019 21.8 0.1 1 23 405 427 405 427 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.024	2	9.2	1.0	1	23	95	117	95	117	0.97
2	7	0.00044	0.036	14.6	2.7	1	23	158	180	158	180	0.97
3	7	0.00013	0.011	16.3	0.6	1	23	251	273	251	273	0.98
4	7	0.0082	0.68	10.6	0.0	1	23	289	311	289	311	0.98
5	7	0.0014	0.11	13.1	1.4	1	23	337	359	337	359	0.98
6	7	0.0009	0.074	13.7	0.0	1	23	378	400	378	400	0.98
7	7	2.3e-06	0.00019	21.8	0.1	1	23	405	427	405	427	0.98

Sequence Information

Coding Sequence: ATGGTGTCTCACAAGCGACAGAGCGTGCTGCCGATTAGGTACAACGATTACAACACTTCCGCATTGGATTCTGACTCTAACATGTCGGATGATGTAGAAATCTGCGAGACGCCTAAATCAGAGGCACAACAGAGTCTGCAGAAATCGCAGGAGATTGGAAAGAGACCGCAAACCGAGGAGTCCAAGATAGATTCTAGCAGCACGGTAGTCGAGCCTGTTGCTAGAAGCGAGATCAAAGTAGACAGTCAGGATGTTAAGATGAATTCTCCGTTGGACGAGAAGCATACTTGCGGCGTCTGCTGTCTGTCGTTCAACAGTCGCGGCGAGGTCGCTGCTCACGTGAGGATGCACAAGACGGATGTTGTCGTGAGGCAGAACAAACACAAAATGATGAGGTGCAAACGGTGCCACGAGGTAGTCGAGGCTAGATTCGTGAAAGCTCACGTGTGCAAGTCTACGAAGCAGCAGCTGCACAAATGCTACGTGTGCAACTCGACGTTCAGGACCGAGAAGCTGCTGGTGCGGCACTTGGAGAGCCACGACCACTCCGAGTTCAACATAGGGAACGTAACGAAGAATTCGAAGGACGTAGGACAGGCTAAATCGGAGAAGCCTCCGTCGAAGACGGAAACTACGTTGGCAAAATCTGAAAGTACATTAGTCAAGTCGGAGAATTTGTTGGAAAAGGGGAGTGTACAGTCGAGCAAGGAGTTGAAACGGGACACAGAACCCTCGAAACCAGAGAAGACGTACACCTGTTTCCTTTGCGACAAGATATTCACGGACGACGAGGTGCTGAAGGATCATTTGCAGAAACACTGCAACGACATGAGCGAGGATGATCAGAGTACTGGTAAAGAGCAGTACCAGTGTGCGATTTGCGGGGACACGTTAGATTCGGAAGACGCGCTCGAAGCACACGTCGAGAAGCATTTGTTCGACGAGGAGGATGATAATCCTAATCTGATCAACATCGCGAACGAAACAGAGAAGACCGGAGACGATCTTTATCGTTGCCACCAATGCACAGACTCGTTCAATTCGGAAATGTTACTGGAAATGCATATGCAGGCGCATGAGGAAGAAGCTGCGATCGCGGAATGGGAGAAGCAAGGGGTTAAAGCTTGCGAATACCAATGCATGATCTGCGACGAGCTCTTCGAAACCGAGGAAGAGCTATCGGAACATTTAGATATTCACAATGGGAACGCTTACGTATGCCAGCTGTGCGAAAAGCCGTTCTCCAGTCTAGAGGACTTGCAGAAGCACGTTGCAACGCATTGA
Protein Sequence: MVSHKRQSVLPIRYNDYNTSALDSDSNMSDDVEICETPKSEAQQSLQKSQEIGKRPQTEESKIDSSSTVVEPVARSEIKVDSQDVKMNSPLDEKHTCGVCCLSFNSRGEVAAHVRMHKTDVVVRQNKHKMMRCKRCHEVVEARFVKAHVCKSTKQQLHKCYVCNSTFRTEKLLVRHLESHDHSEFNIGNVTKNSKDVGQAKSEKPPSKTETTLAKSESTLVKSENLLEKGSVQSSKELKRDTEPSKPEKTYTCFLCDKIFTDDEVLKDHLQKHCNDMSEDDQSTGKEQYQCAICGDTLDSEDALEAHVEKHLFDEEDDNPNLINIANETEKTGDDLYRCHQCTDSFNSEMLLEMHMQAHEEEAAIAEWEKQGVKACEYQCMICDELFETEEELSEHLDIHNGNAYVCQLCEKPFSSLEDLQKHVATH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00860635;
90% Identity: iTF_00860635;
80% Identity: -