Loen007358.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- -
- Assembly
- GCA_028455765.1
- Location
- CM052282.1:3222443-3225684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.6e-06 0.00022 21.7 1.0 2 21 62 81 61 82 0.96 2 8 7.7e-05 0.0064 17.0 1.4 1 23 90 113 90 113 0.95 3 8 0.00017 0.014 15.9 3.5 1 21 144 164 144 165 0.97 4 8 0.00011 0.0093 16.5 0.2 1 23 173 196 173 196 0.95 5 8 4.1e-06 0.00034 21.0 2.8 1 21 241 261 241 262 0.97 6 8 5.1e-05 0.0042 17.6 1.8 1 23 270 293 270 293 0.96 7 8 6.4e-05 0.0053 17.3 1.7 1 21 324 344 324 345 0.96 8 8 6.9e-06 0.00057 20.3 1.5 1 23 353 376 353 376 0.93
Sequence Information
- Coding Sequence
- ATGGATAATTTTTTGAGCGCTTTCGCCGAGCGAGGAGAAAGAGCTTCAGCTTCCTTGACTTGTTCGTTTGATAAAGCTACCCAGGAGTTAATCCGTCGCCCCAGTGTCCGATTCAGGAAGACCCGCGTGTACAGGAGGCAGGTGACACGGAATCATCTCGCGTCAACTCCGGAGACGCCGCTCAAGTGTCCACAGTGCGGTCGAACGTACAAGATGAAGCGGAACCTGAACACTCACATGAGATTCGAGTGCGGCGGGCAAAGAAACTTTACCTGTCACATTTGCCCGGCGAAATACACACAGAACATCGGGCTGCGTCGGCATTTACTGCAAAAGCACAACACTTATCTCCCACCGAAATTCTCCGTCCCCAAACAGCCGGCGATCGGTCGGTGGGCCAGGAACGATTGTTTCAAGAACACGGAACCGTTCACCTGCCACCAGTGCGGCAGGTCGTACCAAATGAGGCACAATCTGGTGAAACATTTGCGATTCGAGTGCGGCGGACACAAGCACTTCGCGTGTAGCTTGTGCCCCGCCAGGTACACGCAAAACGGAAAGCTCAGGCAGCACATGCTGAACGCGCATAACATCTTCGTCCCTCCGCGAAAGAAGTGGATGAGAACCGCTTACAGTGTGTACGAGACACACGGGGTGGCCGATCCGTTCGCCATGAAGAGGTTGGAGCCGGAATGCGTGGACATCTCTGAAGAGCGTGAGttccagtgctcgaactgcgggagaaagtactcgctgaagcacaacctgatgaggcacatgcgttacgagtgcggcGGCCAACGAAGATTCTCGTGCGTCTTCTGCCCGAAGAAGTACACGCAGAACGTCACGCTCCAGAAGCATCTGCTCCGTTACCACAACATCCCGGTGCCACGGAGAAGATGCACTCCACGTCTCCACGGAAGAACACGCAAAATCGCCACACTCGAAAGCTTCCCGAGATCCCGGTTCACCTGCCAGCAGTGCGGCCGTGGGTACACAATGCTGTGCAATCTGAGGAGGCACATGAAATGGGAATGCGGCGGAAAACGTCAGTTTCCTTGTTACTACTGCAGCTACAGTTTTACTCAGAAGACGAGTCTGCAGCGTCACCTAACGGCGATCCATAAAATCGACGTTGTCAACGGGATGGAGTCTAGTCTGCTATTATAA
- Protein Sequence
- MDNFLSAFAERGERASASLTCSFDKATQELIRRPSVRFRKTRVYRRQVTRNHLASTPETPLKCPQCGRTYKMKRNLNTHMRFECGGQRNFTCHICPAKYTQNIGLRRHLLQKHNTYLPPKFSVPKQPAIGRWARNDCFKNTEPFTCHQCGRSYQMRHNLVKHLRFECGGHKHFACSLCPARYTQNGKLRQHMLNAHNIFVPPRKKWMRTAYSVYETHGVADPFAMKRLEPECVDISEEREFQCSNCGRKYSLKHNLMRHMRYECGGQRRFSCVFCPKKYTQNVTLQKHLLRYHNIPVPRRRCTPRLHGRTRKIATLESFPRSRFTCQQCGRGYTMLCNLRRHMKWECGGKRQFPCYYCSYSFTQKTSLQRHLTAIHKIDVVNGMESSLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -