Loen007700.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- -
- Assembly
- GCA_028455765.1
- Location
- CM052282.1:9210238-9211519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0071 0.58 10.9 0.6 1 23 126 148 126 148 0.97 2 10 1.2e-06 0.0001 22.7 1.2 1 23 154 176 154 176 0.98 3 10 1.5e-07 1.2e-05 25.6 0.4 1 23 182 204 182 204 0.98 4 10 0.00033 0.027 15.0 1.0 2 23 211 233 211 233 0.96 5 10 4e-06 0.00033 21.1 5.7 1 23 238 260 238 260 0.97 6 10 0.00092 0.076 13.6 3.0 1 23 269 291 269 291 0.96 7 10 5.1e-05 0.0042 17.6 1.9 1 23 297 319 297 319 0.97 8 10 5.1e-06 0.00042 20.7 0.1 2 23 326 347 325 347 0.96 9 10 1.2e-06 9.6e-05 22.8 3.5 1 23 353 375 353 375 0.98 10 10 8.2e-09 6.8e-07 29.5 1.1 1 23 381 403 381 403 0.99
Sequence Information
- Coding Sequence
- ATGCCGGCACTCTGTTCCAGAAGAAAGAAGAGGACACCGGTGAAAAGCCACTGGCCACTTCGTTTCCCCGTGTACGATCAGTGTATGCCACATGTAAATCGACCCGACCTATTTTTAATAAAAACAGATTCCACCCGCAAAACCGAAGTTGTCGTTGCATCTAGATCGATAGAATCTACAGAACCGGCAAGAGGACGAAGAAGAAGTAGTTCGACCATCGAAAAGTTGGTTTTGACCACGATCAAGAACGAGAATATTCCCGCAAGATCGGTCGAGCTGTCGTCGTTGAGCTCGGAGGTGTTGGAGAGGCTCGATCAAGAAACGGAGGACGCGGAGAAGAGCTCTTCGTCGCCGGATCAGTCCTCGCAGACATGTTATCAATGCAGAGTATGCGCGAAGCTGTTCCGGACGAAGAACCTCTACGAGGGTcacttggtttcgcacagcgacgcgcgtcctttccgatgcgatatctgcgagaagaccttcaagaggacgaacaccttggccgtccatcgaaggatccacactcgagagcggaacttcgtctgcgacgtttgcggccacgcgttcgtgcaggcctcgcagctgaccattcatcagagaagacatttcgacaagtacaccaggtactgcgaggtctgcaagaaagggttcttcacgaacgccgagctgcacggccacatgaatgtgaagcacggcgccaaggagcacgtctgtcactactgcaacaagtcgttcccgaacaaccatacattagtgaagcacctgatggtccacgacccgaacttcaagcccgtgaagcaccagtgcgagttctgcggcaagacgttcgtctacaagaactcactggtgttccacgtcaagtcccacatgggcgagaacagacacgagtgtcatctgtgcggtaagttggtgtcctcgaagggctcccttcaggatcacctgaggctccacagcggtgagaaacagctgatctgcgacgtctgcgggaaggcgttcatcaagaggagcacgctggtcgttcacaagaggattcacacgggggagaagccgtacacctgcgacacctgcgggaaatcgttcacgcagcactccaccctggtcatccacaaacgttatcacacgggacagagaccctatcagtgcacctattgcaataagtcgttcgtttcgaggtcgtccttgaacgcgcatatcaaggtgcactcggtgaaccccgacCAATCGGAATGA
- Protein Sequence
- MPALCSRRKKRTPVKSHWPLRFPVYDQCMPHVNRPDLFLIKTDSTRKTEVVVASRSIESTEPARGRRRSSSTIEKLVLTTIKNENIPARSVELSSLSSEVLERLDQETEDAEKSSSSPDQSSQTCYQCRVCAKLFRTKNLYEGHLVSHSDARPFRCDICEKTFKRTNTLAVHRRIHTRERNFVCDVCGHAFVQASQLTIHQRRHFDKYTRYCEVCKKGFFTNAELHGHMNVKHGAKEHVCHYCNKSFPNNHTLVKHLMVHDPNFKPVKHQCEFCGKTFVYKNSLVFHVKSHMGENRHECHLCGKLVSSKGSLQDHLRLHSGEKQLICDVCGKAFIKRSTLVVHKRIHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYQCTYCNKSFVSRSSLNAHIKVHSVNPDQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00140738;
- 90% Identity
- iTF_00862729;
- 80% Identity
- -