Lmar012350.1
Basic Information
- Insect
- Lasioglossum marginatum
- Gene Symbol
- -
- Assembly
- GCA_028455795.1
- Location
- CM052271.1:3325077-3329874[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 1.1e+02 3.7 0.1 3 23 26 46 25 46 0.94 2 14 5.5 5.2e+02 1.6 4.2 1 23 895 918 895 918 0.80 3 14 0.00078 0.074 13.8 2.2 2 23 1001 1023 1000 1023 0.96 4 14 0.014 1.3 9.8 0.1 2 23 1036 1057 1035 1057 0.97 5 14 1.7e-05 0.0016 19.0 2.3 2 23 1060 1081 1059 1081 0.97 6 14 0.012 1.1 10.0 0.3 1 23 1087 1109 1087 1109 0.95 7 14 2.3e-05 0.0022 18.5 4.5 2 23 1116 1137 1115 1138 0.95 8 14 0.1 9.9 7.1 3.7 5 23 1151 1169 1150 1169 0.97 9 14 2.1e-05 0.002 18.7 1.5 3 23 1176 1197 1175 1197 0.97 10 14 0.0015 0.14 12.9 0.3 2 20 1213 1232 1212 1235 0.91 11 14 7.9e-05 0.0075 16.9 2.7 1 23 1243 1265 1243 1265 0.99 12 14 0.0022 0.21 12.3 3.2 1 23 1271 1293 1271 1293 0.97 13 14 4e-06 0.00038 21.0 3.9 1 23 1299 1321 1299 1321 0.99 14 14 0.0014 0.13 13.0 6.3 1 23 1327 1349 1327 1350 0.96
Sequence Information
- Coding Sequence
- ATGTGTAAACAAGATATCAACGAGATATCAACAATGGATCTAACAAACAATGGAACATCAGGGGGTGCAGTGGCTTGTCCAGTTTGTACCCTTTATTTACGCGAGGGTATCAGCTTGCAAAGACACTTGGACACTCATCCAAAGGAACAAGTCATTGAAGCTCTTATCAAAGCTAGTTCTAATTCCTCGCAGTTGCAACAAACACAGTTATCACCATCCGCGCCTCCAGCTTCACCGTCTGTACAATCGCCGCAAAGTACACAGCCAGTTGCACAGAATACTCATCTATCGACTCAGTCACCGTATCCTATAGGACCAATCTTCGAATGTCCACCGCCGATCGGTACCGTGATGCCACCTCAATTCGCTTCGTTCAGTTATCAACAGTTCGTGAACAATGGCACTATGATGATACCGCAATACGCAATGGCTCCTCAAGCTAATCAAATGATGCAGATGCTCTATAATCCGTATGGTATGTACCAGCAACAACAAATACCAACCGTTCAGATGATCTCGCCAGTCACAACTATACCGAATACACCTAGAGGCAGGTCAATAGTAACTATGGCAGGTGAAACAAACGGCAGAACTGCCATTGCTATACCTGTAAATAATTCCGAGCCAAAACAAATCTTACCTGAGATTTTGCCCGAATCGGAACAAGAATCTGAACAAGTATTACCAGACATCAATCTTCCAGTTTCACCGCCGTCGTTGAATGAAGAGAACTCTATGCATCATAACGAAGGCAACACTAGTATAGTTCAAATAGAAACTGACGAACAGGAGCCCTCTGCCTCGGGTAACGAAAATCAGCACATCATTCAGGATGAATATAACATTCCGAGAACATTGGCGATCACTTGTAATGTCGTGGATACTGCCGACGACAAAGTCGAAAGCGTGTTGCCTGATATCGACGAGGGTGAAACTTCGTGTGTTGTCACTGTAGATGTTCAATGTAAACCTATGCAATACGAATCCTCGGATGCGCAAGAATATGTACACATGTACAAAGACGAAGATGATAATAATAAAGATAGTATGCCCGAAGCATCGCCAATGGCAACGCAAAAGGAAGCTGAGCAAACAACTACAGAGAAAGTTCCTTGCACAGAAGTAAACGAAATCGAAGGTACCTTGTCTCAAACACCTGTAGAAAGTGCAACTAAAGACCCAGCTCAACCTGAAGTAGAACAATTAGAACGTCTTTTAATCACCATTATGGAAAACGAGATCAATACCGAATCGCATAAGAAATCTACCAATAAAAATGAGAAAAAGAAAGAGGAAGAGCAGAGAGAAGATCCGCCCTCTTCTTCTCCAGAAAGAGCAGAAAGCGTAATTCATGAAATAGTAGCTACCAGTTCCAGTGAATTCGATAACAGTTGTGAGTCCGATCTAGAAATAAAAGTTAGTGAAAGTTCAGAAATCGATATAGATAGTAAAGAAGATAAGATTTTAAGTCTTTCGTATCGTTATAAAAACAGTTTGTCTGCACCTGCATCGCCTATGCCATCAGAAATTCGTCGTTCGACCTATTCTGTTCGTTCGGTATTGGGTTCGCATGAAAACCTTAATTCTTATCCGATTGGTTTTGATGCAAACGCATTGCAAGACGAAGAAAATTATGAAGATGAGAAAAATGAAACGGAAGACAACTTCGACGAAGCAGATATGGAAATAGAAGAAATCCAGAGTCCTCATACACCTTTTGTTAAATATGGGGAGAGCCCAGATAATGTTAGGTCGCATACTCCATTATCTGTGAGCAGTGGTATTTCTGTATTAAGGGTGAGGAAGGATCTCAGTAAACCGTGCTCACCCGCTTCTGTGCATTCATTTTGTCACATAGATAATGGTATAAGTCACGATGAAGAAAGTAATATAGCAATGGACGCAACACCAGAAAAAGATCCTATCGATTGCTCTTCTATGGAACAAGATGTAAAGACAGATCAGACAGAAACGTTTTTGAATGAAACTGTCGAGAAGAAAATAGAAGGAAATTCAGCATATCAATCTGTAATAACTGAACATGTGAGCTCATTTCCCACAATTTCGCAACAATCATTGTCGTCGTCGCATGAACCGTATACTAGCACACCAAATAAAAGTAATCTTGTAAATCTGTCAGAATCTATAGATGTTGCGAGTAGTTCTGACTCAAAGAGTTTCCATTCCTCTAAATCAATTATACAAAAGCCATCGATGGAACTACTTAGTTTAAACGAAGACGCCCATGCAGGTCCAATGAATGTTTTTGAATTTGATGGGCTTCAGATCTTAGTTCCTAGTACATTTATAAGTGATTCTTCACAAAAAGCTGTTAGTGCAACCAGTCAGCAGTCTATGGCAAGCAGCGAAGGTGGAGTAGGCGTAGACGAAGAAGTAAAGAGTATTAATATGAGAGCCGATGAAACTATGCCACCTAGAGGTGAATTATCGGAACAGGAAAGCAACGGATGCACAGAACCATCTGCTTGGCAGCTGTATGCTGGTCAGGAGTCATCGCGTATGTCAACTTCTTATGACTTGATGGCCCGTGAGAGTTGGGAAGAATCCGAAGGATCAGACAATGAAATTAGTGGACCGTTATTAGACAGTAGATCTTTAGCTACGCATTTCACATCGAGTTTATTCCTAGATCGAGATAGAAAAACTCCAACAAAACGAACATTCAAGTGTTATCATTGTCCCGAGGTATTCGATTGTCCGAAAGAACGCAGGGTACACAGTACTACTACGCACAAAGAAGCTGGACCTAGTAGTAGCAGAGATTCCACAGATCAACCTGAGGTGAAAGATATCAAATTGCTAGACGGTCGTATGAACGCATTTGAGGATATTTTTGTACCAGGTTTACATGTTCAACAAGTTTATCATCAACAACCGCTATTACATCAACTCCAACCGCCGCAATCATCAGACGTAACTGCGAAAGTAGAACCTGATCAAAAGATTGAAACCTTAGTGTTACCGTCAAACATTGAGGTAGTTTGTACTCTGTGCAATCAACGATTTAGTAGTGAAAAATCGTTACAGCTACATCATAAAAGAGTACATCTCACGGAAACTTCGAAACGAGTTCGTGACAGTACCAAGTGCCAGATATGCCAAGAAGAGTTTCCCTCGGTTTTGTTGTTCAATGCACATCTGAAAATACATCCGTTAGAGTGTGGTCAATGCGGAAAGTATTTTTATAGGAAACAGAACTTCAAGTTACACATGAAACGACATTTAGGGATAAAACCGTTCCCGTGCACCGTTTGCGACAAAGCATTTTTAACGAAACAGAAGTTGGACGAGCATACCAATGGACATACTGGAAATGCACCTGTTAAATGCAATCTTTGCAATGAAACATTTCGTAGATATTCAAATTTGACTCAACACAAGAATAGACATCATCTTAACATAAAAAGGAAATTAAAGGATTATATATGCCACTGCGGCGAAGTATTCCATACAAAGAAAAAATTGGCATGGCATAAAGAGACACACGATGACAAGCCCAAAGCGTGTACGTATTGCAATGAAAGATTTATTCATATGGCCAGTCTGACCAGACACATGCGTCGTGCCCACAACAGAAGATTCGTTCCGGATGCTCAAAGGGAGAGCGAAAACGTTGAATGTCCTATATtttgctccaaggcgtttAGTACTAAGTGGAACTTACAATTGCACAAATGGACACACGCTGCCCGTAGCACCAAACCTTTCAAGTGTAATCAGTGTAGTGCCGCATTTTACCGGCACAGCGATTATACCGCTCACATGAATTCTCATAGGAACGTGCGTCCTTATACCTGCAACTATTGCGGAGCGCAGTTTATACGAAAGTATAATTGTCTAAGGCATGTCAAAGAGCACGAGGAGAATAAAGCATACACGTGCGATGTTTGCAACAAAACATTTCATAGATCGTACTATCTGAAGGAACACTTGCGAGTGCATTCGGGCGCTAGACCATATACATGTCATATTTGTGGGAAGTCAAGCGGTACGAAATCGAACCATAACAAGCATGTTAGAATCCATCATGCGCGAGAGCCTGTAAATACCGAAAATTAA
- Protein Sequence
- MCKQDINEISTMDLTNNGTSGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASSNSSQLQQTQLSPSAPPASPSVQSPQSTQPVAQNTHLSTQSPYPIGPIFECPPPIGTVMPPQFASFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQQIPTVQMISPVTTIPNTPRGRSIVTMAGETNGRTAIAIPVNNSEPKQILPEILPESEQESEQVLPDINLPVSPPSLNEENSMHHNEGNTSIVQIETDEQEPSASGNENQHIIQDEYNIPRTLAITCNVVDTADDKVESVLPDIDEGETSCVVTVDVQCKPMQYESSDAQEYVHMYKDEDDNNKDSMPEASPMATQKEAEQTTTEKVPCTEVNEIEGTLSQTPVESATKDPAQPEVEQLERLLITIMENEINTESHKKSTNKNEKKKEEEQREDPPSSSPERAESVIHEIVATSSSEFDNSCESDLEIKVSESSEIDIDSKEDKILSLSYRYKNSLSAPASPMPSEIRRSTYSVRSVLGSHENLNSYPIGFDANALQDEENYEDEKNETEDNFDEADMEIEEIQSPHTPFVKYGESPDNVRSHTPLSVSSGISVLRVRKDLSKPCSPASVHSFCHIDNGISHDEESNIAMDATPEKDPIDCSSMEQDVKTDQTETFLNETVEKKIEGNSAYQSVITEHVSSFPTISQQSLSSSHEPYTSTPNKSNLVNLSESIDVASSSDSKSFHSSKSIIQKPSMELLSLNEDAHAGPMNVFEFDGLQILVPSTFISDSSQKAVSATSQQSMASSEGGVGVDEEVKSINMRADETMPPRGELSEQESNGCTEPSAWQLYAGQESSRMSTSYDLMARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCYHCPEVFDCPKERRVHSTTTHKEAGPSSSRDSTDQPEVKDIKLLDGRMNAFEDIFVPGLHVQQVYHQQPLLHQLQPPQSSDVTAKVEPDQKIETLVLPSNIEVVCTLCNQRFSSEKSLQLHHKRVHLTETSKRVRDSTKCQICQEEFPSVLLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDDKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPIFCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962003;
- 90% Identity
- iTF_00183443;
- 80% Identity
- -