Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: salm
Assembly: GCA_028455795.1
Location: CM052251.1:5003172-5015120[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.4e-06 0.00042 20.8 0.9 1 23 378 400 378 400 0.98

2 9 8.8e-06 0.00083 19.9 2.1 1 23 406 428 406 428 0.98

3 9 0.055 5.2 7.9 3.8 2 23 789 810 788 810 0.98

4 9 3.8e-08 3.6e-06 27.3 0.6 1 23 816 838 816 838 0.97

5 9 5.3e-05 0.005 17.4 2.6 1 23 848 870 848 870 0.98

6 9 0.0018 0.17 12.6 1.9 2 23 1173 1194 1172 1194 0.97

7 9 0.027 2.6 8.9 1.0 1 14 1200 1213 1200 1214 0.92

8 9 5.1e-07 4.9e-05 23.8 2.1 3 23 1400 1420 1398 1420 0.96

9 9 1.8e-07 1.7e-05 25.2 0.9 1 23 1426 1448 1426 1448 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.4e-06	0.00042	20.8	0.9	1	23	378	400	378	400	0.98
2	9	8.8e-06	0.00083	19.9	2.1	1	23	406	428	406	428	0.98
3	9	0.055	5.2	7.9	3.8	2	23	789	810	788	810	0.98
4	9	3.8e-08	3.6e-06	27.3	0.6	1	23	816	838	816	838	0.97
5	9	5.3e-05	0.005	17.4	2.6	1	23	848	870	848	870	0.98
6	9	0.0018	0.17	12.6	1.9	2	23	1173	1194	1172	1194	0.97
7	9	0.027	2.6	8.9	1.0	1	14	1200	1213	1200	1214	0.92
8	9	5.1e-07	4.9e-05	23.8	2.1	3	23	1400	1420	1398	1420	0.96
9	9	1.8e-07	1.7e-05	25.2	0.9	1	23	1426	1448	1426	1448	0.98

Sequence Information

Coding Sequence: ATGCAGCTCATGAGATGGAGCATCACGCGGCGTCTCGAATCACGCGGCATCAAGCAAGGCACCTGCAGACAGTCCAGGCTATCGTGTCCTCGATCCTCCGGAGAAGAAAATGACTTTACATCGGACGGTGAAGAGAGTGGTGGTCCGGGAGGCGGAGGAGACGAAGCCGTGGATCTCACAGCAGCCCGATCTCATCAGGGCGATGAAGATGATAAAGACCAGGATGACGCTTTGGAGGAGGACGAAGAGGAAGGTGTGGACGAACAGGATGACCAGGAAGACGACGAAGAAGGTTCTCGTAAACAGATGCGTCACCGTCAGGACGCGGAGAACAACAACAATTTCGTGGAGAGTGGCGCGGCTGCTGGCCTATTTCCACCAGCTGGGACTAGTCATGTCACCTTGGAGGCCCTTCAGAACACAAAAGTGGCGGTCGCTCAGTTTGCGGCGACAGCCCTTGCCGGTGGCGCAGACAGCGAGGCGGCTCTGCAAGATTTGGCGCTGTTGCAAAGCACCTTGTACACCCTGCAGCATCAGCAGGTGTTCCAGTTACAGTTAATCAGCCAGCTTCAGCAACAACTGTCCATCACGCACAGCCAATCGGCGCAGCAACAGACCGTGGGTGAGCCGTCGGATAACAAAGAAGTGTCTCCGTCTCCCATTATTCAACCGAAACCTATATCGAGTTTAACGTCGCCTCCGTCGTCGCGTCCGCCGAGCCATCAGCAAGCTTCGCCGGCTCCGATGACGCCGAATCTGTCCCAGGAACGGCCGACTCCGACCAGCAGCGCTTCTCCTTTGAATCTTCCGTTACCCGCGTCGAATGCGACGGGCACCACGGCTACCACGAGTAGTAGCCAAGTGCCGATGTCTCATCAGATGCCACCCCTCTGTTCCATCAGTTCTTCCCTTGCCTCGTCGATAATAACCAATACCGATCCGCCGCCGTTGCATGAGCCGAACACTCTGGAGATGCTGCAGAAGAGAGCACAGGAAGTACTGGACAACGCCAGTCAGGGTCTGCTGGCCAACAACCTGGCCGACGAACTCGCGTTCAGGGGTGGGAAAGGTTCCCGTCCGTCCCCGTACGATTCAAAGTCTGGTAGTGGTCGCGGGGAGCCGTTCTTCAAGCATCGATGCCGCTActgcggcaaggtgttcggcagcgattcagcgcttcagatccacatacgatcgcacacaggtgagcgaccctttaaatgcaacgtctgcggcagccgcttcaccacgaaagggaacttgaaggtccacttccaaaggcatacggccaagTTTCCACATGTTAAGATGAACCCGAATCCCGTTCCGGAACACCTGGACAAGTACCACCCACCCCTGCTACAGCAGATTGCCTCCGGTCAGAGACCAATGCCGTCCCCGCCGCCGCCGCCACCTTCTCATCATCCCTCTTTTCACCCGGCGGCGGCACATGGTTTTTTACCTCCCCAGCCGCCCCTACCACTCAGTTTAGCCCTGCCCGGTATGCCACCCTTGTACAGATCACCGGTCGTCACTCATCGAGACGATCAGGACGTACCGGAGAACCTGAGTAAACCTATAACCACTGCCCCTACCACATCTCCACATTCCCCCGCGATTGTGTCGAACTCTCGTCATTCCTTTCACGACAATCACCAACAACAAAAGCAGCAGCTCGAGCAGAGGGACGAGATCAAGCTCGAGCAGCGATCGCCTATGCAAGAGCAGTACCAGCAACGGCCCACGAGTCGGGAAGCTGCCGAAAGGATAACCCCGAAGAAAGAGCCGGAAGAAGCCGAGGAGCCAACGGAAGAGGAAAGCGAGGACTTTGAAGAAACGTCTAGACGGTACTTGAACTCGCCCCAATCCTCCGTCAATCCGCTCTCACAGCCGCAAACATACGAGGACTGCAGCATGGACAGCAAGATCAGCGGACGACTAGAAGCGGACGGTGACATGGAGGTCGACGAAGAGATCGAAGAACAACCCGAGAATCTGTCCGGTCGAGGAGCCATAAACCGTTTACCGCAGCAGATCGTTGCTTACCCTGGAGCATCGCCTGCCAGCAGTAGCGCAAGTAGCGGAAGCCTTCAGACGTCGTTCGCGGGTATCCTCTTTCCCGGACCACCGGCCCATCATCAAATACCCCATCACGCTGCGGCTACGGCTATAAATACACCGGTAGTTTCAACCAGCGAGATGATCGATCCGGCCAAGGATCCAGCCATCTACTCGAGCCTTTTACCACGGCCGGGCAGCAACGACAACTCTTGGGAAAGTTTGATCGAGATAACGAAGACCTCGGAGACGTCGAAGTTGCAGCAGTTGGTCGACAATATCGAGCATAAACTGACCGATCCGAATCAAtgcgtgatctgccacagagtattatcgtgcaaaagcgcgctgcagatgcactacaggacccacaccggggaacgaccgttcaaatgtaaaatttgcggtcgcgcgttcaccaccaagggcaatctgaaaacgcacatgggcgtgcacagagcgaAACCACCTCTTAGAGTACTACACCAATGCCCGGTCTGTCACAAGAAATTCACAAACGCGCTAGTCCTGCAACAGCACATACGTTTGCACACAGGCGAGCCGACGGAACTCAGTCCGGAACAGATCCAGGCTGGCGAGGTGAACGAGTTCCCACCGGGTTATCCTCACCACCCATTGGCATCGTTTCTCCCGCAAGGCTTTCCACCGATCCACCCCGCAGGAGCGGGCTTTCCCTTAGGTTTTCCGCCGAAATTGGAACTAAAAGATGAGGCtcaacagcaacagcaacaccatcaccaccaccaccaccatcagcagcagcagcagcaacagcagcagcagcagAGGTATGCGGAGGATCATAGCGAGGAGGCGGACGACCAGGATGACGAGGAAGAGGACCGTAGAGAAGACGACGAGCGGTGCGACGTGAATCGCGACGGTCGATGCGAGCCAGAGGACGAGCAGGATCACGAGAGCGAAGAGAACGAGCACAAAGATCTCGGCTTGCCGAGTTTCTCGACGTCTCTAGCAGCTCTTGAGAACCAAGTGCGAACCATCACCACGATAGCCACCTCGAGCGCAGGGAACTTGGCTAGATCACCACCTTTTCACCGGTACAACGGCAGCGAGAAAAGCAATAGCCCGCCGAACACCGGTGCACCCTTAGACTTGACACCTCGTGCATCCTCCACGCCAGCCACAGTGGCGTCGATACCAACGCCGCCACCGCTGCCCCCGCCTCAGACAGCGACACACCATCCACATCCCTTCGGCATGTTCGCAGGCCTCCTGCAGGCGGTCTCGTCGTCGCCGTCCACCAGCAGCATCGGATCCTCGAGCATAAATAGTGTCAGTTCGATGAACGCCGTCACTCCGGGATCCGCCGCCGCTGGACCTCTGGCCTCGCTTACCACGTCAGCTGTTCTGGCTGCCACATCCACCTACAACCCGCTCGGCCTAGCTGTCGGAGGGCCAGCAGtgcgtggaaacaccacatgtaatatctgctacaagacatttgcgtgcaactccgcgctggagattcattaccggagccacacgaaggagcgacctttcaaatgcaccatatgcgaccgaggcttttccacgaagAACGACGGTTCCGGTCAGCAAACGTGCAACTGTACATCTCAACCGTTGCCCGATAATAGTTCGATCACTTCACCCGATTCCCAATATCAAACATCGTGTGCCAGTAATCGAGAGAAACCAAAACGCAGGCGGCGACGGCCTGAGGAGCGGAAGAACCGGGGGCGGAGAGGAGCCGGAGGGGGGCGGGGGCTGACACCTGTCTATCCTGCCATCCGCCTACCCCCGCTGATGTCACCCGCCCTCGGACTTCTACCCTCGGCCCACAGCCTCCTGGGGAACATGAAGCAGCACATGCTAACACACAAAATACGCGACATGCCGCCTCACCTGTTCAGCGACTCGAAGCAGCAGATGCAGCAGCAGCAGTCCCAGGAGCACGAGACCTCGAGGAGTCCGATGTGCGCCGAAGACACGAGTTTGCCACCGCCTCCGCCACCTCCGCCGCCTCCTCCACCGATACCGCCGACGTCGATAGAGCAGACGATTTCAGTGAAGAGATCTCCGTCCGAAGGAGACCTGCCAGCACCAAAGAGACCAGCTAgcgtgccgagcaaacacttgtgccagatttgcaataagaatttctcctcatcttcggcgctccagatccatatgagaactcacaccggcgacaaaccgttccgatgcaccgtctgccagaaggccttcaccaccaagggcaatctgaagGTGCACATGGGCACGCATATGTGGACCAACGGAGCCTCTCGACGAGGCCGTCGAATGTCGCTGGACCTGCCTCCCCTACCCATCACGCCCAAAGACTCGGAATTTCTTCAGCGACGGCCGGATCTCTTCTATCCGTATTTACCCGCGCCGTTCCTTAACGGCGTACAGCAGAAATATTTTAAGGTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCCGTCGTCAAACGGTAGCAATCAGAACTCGACGGGTGTGCCCTCGTGGACAGGTGACGGACTTCAGCATCACTTCGACAGGGAGCCTTCGAATCGGTCCGAGAGCAACTCGACACCACCGTCAGCCCGACTTCCACCACCTCCGGCTGCCAGGGGCGAAGGTTTAGCCACGTGA
Protein Sequence: MQLMRWSITRRLESRGIKQGTCRQSRLSCPRSSGEENDFTSDGEESGGPGGGGDEAVDLTAARSHQGDEDDKDQDDALEEDEEEGVDEQDDQEDDEEGSRKQMRHRQDAENNNNFVESGAAAGLFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHSQSAQQQTVGEPSDNKEVSPSPIIQPKPISSLTSPPSSRPPSHQQASPAPMTPNLSQERPTPTSSASPLNLPLPASNATGTTATTSSSQVPMSHQMPPLCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGGKGSRPSPYDSKSGSGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPSHHPSFHPAAAHGFLPPQPPLPLSLALPGMPPLYRSPVVTHRDDQDVPENLSKPITTAPTTSPHSPAIVSNSRHSFHDNHQQQKQQLEQRDEIKLEQRSPMQEQYQQRPTSREAAERITPKKEPEEAEEPTEEESEDFEETSRRYLNSPQSSVNPLSQPQTYEDCSMDSKISGRLEADGDMEVDEEIEEQPENLSGRGAINRLPQQIVAYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHHAAATAINTPVVSTSEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTELSPEQIQAGEVNEFPPGYPHHPLASFLPQGFPPIHPAGAGFPLGFPPKLELKDEAQQQQQHHHHHHHHQQQQQQQQQQQRYAEDHSEEADDQDDEEEDRREDDERCDVNRDGRCEPEDEQDHESEENEHKDLGLPSFSTSLAALENQVRTITTIATSSAGNLARSPPFHRYNGSEKSNSPPNTGAPLDLTPRASSTPATVASIPTPPPLPPPQTATHHPHPFGMFAGLLQAVSSSPSTSSIGSSSINSVSSMNAVTPGSAAAGPLASLTTSAVLAATSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNDGSGQQTCNCTSQPLPDNSSITSPDSQYQTSCASNREKPKRRRRRPEERKNRGRRGAGGGRGLTPVYPAIRLPPLMSPALGLLPSAHSLLGNMKQHMLTHKIRDMPPHLFSDSKQQMQQQQSQEHETSRSPMCAEDTSLPPPPPPPPPPPPIPPTSIEQTISVKRSPSEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKYFKVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSSNGSNQNSTGVPSWTGDGLQHHFDREPSNRSESNSTPPSARLPPPPAARGEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966175;
90% Identity: iTF_00361140;
80% Identity: -