Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: -
Assembly: GCA_028455795.1
Location: CM052242.1:975145-984422[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00034 0.032 14.9 0.7 2 19 466 483 465 487 0.89

2 17 3.2e-05 0.0031 18.1 3.2 1 23 493 515 493 515 0.98

3 17 0.0003 0.029 15.1 0.1 3 23 523 544 521 544 0.94

4 17 0.38 36 5.3 1.8 1 23 551 574 551 574 0.98

5 17 8.2e-05 0.0078 16.8 0.8 1 23 578 600 578 600 0.97

6 17 0.0027 0.26 12.0 0.5 1 23 606 628 606 628 0.98

7 17 0.00016 0.015 15.9 2.3 1 23 634 656 634 656 0.96

8 17 0.0065 0.61 10.9 0.2 1 17 661 677 661 678 0.90

9 17 0.9 85 4.1 1.7 1 23 1175 1198 1175 1198 0.97

10 17 1e-05 0.00099 19.7 0.1 1 23 1204 1226 1204 1226 0.97

11 17 0.064 6.1 7.7 2.3 1 23 1232 1255 1232 1255 0.93

12 17 1.3e-05 0.0013 19.3 0.4 3 23 1263 1283 1261 1283 0.96

13 17 0.57 54 4.7 0.6 2 23 1290 1312 1289 1312 0.94

14 17 0.0005 0.048 14.4 3.5 1 23 1316 1338 1316 1338 0.98

15 17 0.023 2.2 9.1 0.7 1 23 1343 1365 1343 1365 0.98

16 17 7.2e-07 6.8e-05 23.3 0.4 1 23 1371 1393 1371 1393 0.97

17 17 5.8e-05 0.0055 17.3 1.5 1 21 1398 1418 1398 1419 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00034	0.032	14.9	0.7	2	19	466	483	465	487	0.89
2	17	3.2e-05	0.0031	18.1	3.2	1	23	493	515	493	515	0.98
3	17	0.0003	0.029	15.1	0.1	3	23	523	544	521	544	0.94
4	17	0.38	36	5.3	1.8	1	23	551	574	551	574	0.98
5	17	8.2e-05	0.0078	16.8	0.8	1	23	578	600	578	600	0.97
6	17	0.0027	0.26	12.0	0.5	1	23	606	628	606	628	0.98
7	17	0.00016	0.015	15.9	2.3	1	23	634	656	634	656	0.96
8	17	0.0065	0.61	10.9	0.2	1	17	661	677	661	678	0.90
9	17	0.9	85	4.1	1.7	1	23	1175	1198	1175	1198	0.97
10	17	1e-05	0.00099	19.7	0.1	1	23	1204	1226	1204	1226	0.97
11	17	0.064	6.1	7.7	2.3	1	23	1232	1255	1232	1255	0.93
12	17	1.3e-05	0.0013	19.3	0.4	3	23	1263	1283	1261	1283	0.96
13	17	0.57	54	4.7	0.6	2	23	1290	1312	1289	1312	0.94
14	17	0.0005	0.048	14.4	3.5	1	23	1316	1338	1316	1338	0.98
15	17	0.023	2.2	9.1	0.7	1	23	1343	1365	1343	1365	0.98
16	17	7.2e-07	6.8e-05	23.3	0.4	1	23	1371	1393	1371	1393	0.97
17	17	5.8e-05	0.0055	17.3	1.5	1	21	1398	1418	1398	1419	0.95

Sequence Information

Coding Sequence: ATGGAGCTGGGGGAGGGAGAGGCGAAGATTTGTCGACTTTGCGGCCAGTACGAGAGCATGTACATCGACGTATTCAGCGATGAAGGCACCAAAAGACTTTTAGGCCTGAAAATCCATTCGAAAATCAACATTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCCGAAGTAAAGACTGAAGAAACAGCACCAAGCACATCGACAAACAATAACAACAACGACATCGACAAAAACCTTAATCCTCCAGCCAAGGAAAGTGTTAAAGAAGTAGCACAACGCGTTTCGAAAACGACAGTGAAGACTCAAAGAAATTTACGAAGTCAACATCAAGCGAACAGTCACAGTAATGGTATCACTAGTAGCAGCAGTAACGGTAACAATAATGGCATCAGTAACGAAGCTGCTAAAGATCAAACCACTGCTGAAAGCACAACGGAGAATAATACAGACAATATCGAAATTGTTCAGAGCACCGGAAATACACCCACGAGATGGCTCAGAAGTAGGCAAAACGCAGAAACTACTTTGACGAATGAAGTAACAATCGATACACCGATCGCGAATAGGCTTAGAAGTCACGTTAGTACCGCTGCAGAGATAAACGTGAATATTCCTCGCAGTAATTCCAGCGAGGCCAGTGGAAAACAACAAGATCCTAATACCATACAAATCCCAACGTCCGCTTTGAACAAGCTTCTGACCATTGTGTCGAATTCACCAAACATAGAAGTGTCCGCAAAGGAATCGAGAAACCAAAGCAACGACACGGAAGATATCAGTTTCACGGTCGAATTGTGTAAAAAGGAGAGCGACGATATTGAAACGGTACGAGCCAGAGTATTTCCAGATCAAGGCTCGTGTTTGGTAGACGAGTCTATCGTTGGTCTTCTACAAAATCAAAGTTGCGTAGAGGTGAACAGTATAATAAACACTATCCTCAGTAGCAGTCTAAAGAATGGTAATTCGACAAAGTCAAAGGATTCGGCCGAATTCGAGCAAAAATGGCAGGCTTCTCAGAACCCGGAAGAACTGTTCAAGATCGACGGAGAGGAGATTCGCGTGGACGACAATGTGGAACACATCGTGACGGATAGTCAAAATGGTTACTCGTGCAAGCTGTGTTGTAAATTCTACGAGCGTAAAGACAAATGTATGGTGCACGTGAAGACGCATCTGGGGATAAAACAGTACACGTGTATTTTATGCAACGCGAAATTCGTATGCAAATCCGACGTGATGAAACATATACGGTGCTCGCATACCAATCCTAGACCGATACAGTGTCCAAAATGTCCAAAGAGGTTCAAATCCAAGTTTTATCTAATGGAGCACGACAACGTGCACAAAGGCGTGAGGCCGTACGCTTGCACGGATTGCGGCCAGAGTTACCATCACAAAGTATCGTTGCAGATACACATGAAATCGCATTTACCCCCGCAGAACTTGGCTTGCGAGTATTGCGGTAAAGTGTTCCCGTATCGTACGAGACTGTTGAGTCATATCGCCAGCGTTCACCTGAAAAATCGTCGGAACTTCAGGTGCCGATTTTGCTACAATCTCTATTCGAGTCTTTCGGTTTTAAACGAACACATTAAAACGCGTCACGCGACTACCTACACTTGCGAAGTGTGCACCAAAACGTTCAAAGTCGCGTCGAAATACAAGGCTCACGTGTTGCAGCACACCAACCCTAAGCCTTTCGTGTGCACCGTTTGTAACAATAGATACGCGTCGAAAGCATTCCTGAACGAGCATCTACTGAAACACGAAGGGCTGAGGAAACATATTTGCCAAAAGTGTGGTGCGAGATTCGCCCAAGCTAGTCACTTGGCCGCGCATCGGCACGTGCACGGTGAAAAGAAGCATGCTTGTTCGGAATGCGGGCGAAAATTTAACAGACGCGACAACATGAAGATAAAGGAGAACGACGGATTGCCGCACGTTGTTTGCTTGCGGTGCATTGGCGCGTTGGAGTTCTTGTGCGACTTTTATAGCTGTTGTCAGCTCACCCAAAACAAACTCTCCTTGTCGGAAGAAGCTAGCAAATACTCGTCGGAGAATACACCTAGAAGAATACCGCAGCAGGAAAACGATGCGGAATCTAACAAGGAAAATGTTCTGCCATCTTCAAGCGAAACGAAACGAAGAAGCAAAGTTGCGTCGCCCAGCAAGAAGGACCAGCCTATGAATGAAAACACATTAGACGATAGAAAACAGTCGGCTACGAACAACGCGATTGTTCAGGAGCAAAAGTTGAAGGATGAACAAAGCAACGACAACGCTTTAGCACGCGGAAATCCGTTGTCGGTAAAGGATATCTCGAAGAAAGGGTCGAAATTCTTGAACAGCTGTACAGTTTCAACGAAAAAAGGCGAAGCAAACGATAAAATAGCTTTAACAGAACCAAAACGACCCGTAAGAGACCGGAAACCTCGATTACAGAAACTTAGAGAAGTTTGTGTATCCTCGAATAGAATAAAAGAATCCCAGAAAGGTTCGGATGAGATGGAACGCGATGGGAATCAACGTAAGAGACAGTGTCTGGGTACAATTTGCACGAACGGTACATCGAATGTAACTAAGAGCGCTGCGATCTTGTCCAAGCCGCAAATCGAGCTACCATTGGAGAATACAGTAGCGACGATACCGTCGAGTGAACGCTGTATTGAAAATGATAATGCGAATAAAGATTTAATCGGCGACGTAGCGGAAGTGACTTTGAAGGGCGAGTCTTTAAACGAGGAAAGAAAAGAGGAGGGCTCCACAAAAAGCAAAGCGACATCTGTAATCGTGAAGCAAGAGAAAGCAGACGTAGAAGTAATTTCACAAGAAACTGGAAAGCTGAACCAACTAGTTTGGATTCCAAATGAGATACTGACAGAGGGACAAACGAACGATCCTATGATCGACCAAGATCAAGAAATTGACCTGGACTTGTCGTTACGGTTGAGTCCTGAATTGGGCGAGGAAACGGAAAATTCTAATGTCGTCGCCACTGCTCacgattcagacgattCAAACTATACCGACGATACCGAGCAGCCGAAAACAAATCTGCCGTCCGTGGAACAAACTCGTGCGACCGTTATAAGATCGTCGCGGGAAAGTCCTGTACCGGTAGACGTTAAACCGGATGTGACCAACAATATCGACGGTACCAAAAATAATTCGAAATTCGATTTACAGTTTTCCCAGGGTAAGATTTCCGAATTGATAAGCGAGAAGCAAAAAAAAGAGATCGAGACTTATTATAGAATTGATATGTCTGCCATTAATGCGGAAGAAGTACAAAGAAATTTGACGGTAATCGACAAGAAGAACATTCGTTGCAACATCTGCGGAAGTCTTTATCTTCGGATGGACAAGTGTCAGGTGCATATTTGGGGCCATTTGCAGATGAAACCGTTCCAATGCAAAGCGTGCGACTTTGCTACGGTAACTGTTAGCAACGTTCGTTGCCATATCAGGAAGAGTCATTTAAAGATCAAACCGTATGCGTGTAAACTTTGCGGAAAGAGTTACGCCACAAACGGGTTATTGATGCAACATATTAATGGCCACACAGGATCCCGTCCGTATGAGTGTAAAATTTGCGATTTTCGATGCGCAACTCGACAAATGCTAAGCTATCACAGCAGTGTCAATCACAAACCACTCAAGGAAATCAATTGTAAAATTTGTGGCATAGAATTCTATTCGAGAAGCAAATTACGCACGCACATGCTTATTCATAAGAAAGATAAAGTGGTCATGTGTAAACTATGTTCCGCTTATTTATCAAACGCGAAAGCGTTGGAAACACACCACCAAAACCTTCACATGCAAGACTATGTCTGTAACATATGTGGCAAACATATGAAATCGAAAAAAGCCTTGCACAATCATCAAAACGTACATAAAACGGGAAAGTACAAGTGTACTTTATGTCCAAATGTGTACAAGAGCAGTCAAATACTGAAGGAGCATCTCCTGAAGCATGAAGGAATTAGGAAGTACAGGTGCGGTGATTGTGGCAAGACATTCGGGCAACAGTCTCACTTGGCTGCTCACAAGGCAGTACACAGCGGAGTTAGATTCTATTGTCCTGGATGCGAGAAATCTTTCAACCGTCATGACAACATGAAGATACACACGAAACGGTGTAAACCGTTTCTCGCAAATCCAGAACTGAAGAAGCTTTTAATAAAGAAAGAAAGGAGTTCGTCGACTAGCAAAGTAAACAAGTCAACCGAAGATACAACCAGTAAGGATTCTTCATCGCTGAATTTCGAAAGTTTCTTCGAGAAACAGACCGACAATGAAGAGATATCGATAAAGACTGTAAACGACAAAGAAGAGACTGCAATGAAATTAGGGTTGAATATCTCTTGCATCGAATCCCCGGATAAATCGTGGATTCGCGATAATGTGTATCAAGCGGAAGGGGAGCTAACGGGATCCTCCGAACTCAGTGCGATTCAAATCGCCGAACCGAACGATACATTCATTTTGGAAAATGAGAACGTAAGAATACTTGAGATATTATAG
Protein Sequence: MELGEGEAKICRLCGQYESMYIDVFSDEGTKRLLGLKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEETAPSTSTNNNNNDIDKNLNPPAKESVKEVAQRVSKTTVKTQRNLRSQHQANSHSNGITSSSSNGNNNGISNEAAKDQTTAESTTENNTDNIEIVQSTGNTPTRWLRSRQNAETTLTNEVTIDTPIANRLRSHVSTAAEINVNIPRSNSSEASGKQQDPNTIQIPTSALNKLLTIVSNSPNIEVSAKESRNQSNDTEDISFTVELCKKESDDIETVRARVFPDQGSCLVDESIVGLLQNQSCVEVNSIINTILSSSLKNGNSTKSKDSAEFEQKWQASQNPEELFKIDGEEIRVDDNVEHIVTDSQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYACTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCTKTFKVASKYKAHVLQHTNPKPFVCTVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACSECGRKFNRRDNMKIKENDGLPHVVCLRCIGALEFLCDFYSCCQLTQNKLSLSEEASKYSSENTPRRIPQQENDAESNKENVLPSSSETKRRSKVASPSKKDQPMNENTLDDRKQSATNNAIVQEQKLKDEQSNDNALARGNPLSVKDISKKGSKFLNSCTVSTKKGEANDKIALTEPKRPVRDRKPRLQKLREVCVSSNRIKESQKGSDEMERDGNQRKRQCLGTICTNGTSNVTKSAAILSKPQIELPLENTVATIPSSERCIENDNANKDLIGDVAEVTLKGESLNEERKEEGSTKSKATSVIVKQEKADVEVISQETGKLNQLVWIPNEILTEGQTNDPMIDQDQEIDLDLSLRLSPELGEETENSNVVATAHDSDDSNYTDDTEQPKTNLPSVEQTRATVIRSSRESPVPVDVKPDVTNNIDGTKNNSKFDLQFSQGKISELISEKQKKEIETYYRIDMSAINAEEVQRNLTVIDKKNIRCNICGSLYLRMDKCQVHIWGHLQMKPFQCKACDFATVTVSNVRCHIRKSHLKIKPYACKLCGKSYATNGLLMQHINGHTGSRPYECKICDFRCATRQMLSYHSSVNHKPLKEINCKICGIEFYSRSKLRTHMLIHKKDKVVMCKLCSAYLSNAKALETHHQNLHMQDYVCNICGKHMKSKKALHNHQNVHKTGKYKCTLCPNVYKSSQILKEHLLKHEGIRKYRCGDCGKTFGQQSHLAAHKAVHSGVRFYCPGCEKSFNRHDNMKIHTKRCKPFLANPELKKLLIKKERSSSTSKVNKSTEDTTSKDSSSLNFESFFEKQTDNEEISIKTVNDKEETAMKLGLNISCIESPDKSWIRDNVYQAEGELTGSSELSAIQIAEPNDTFILENENVRILEIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00863429;
90% Identity: iTF_00863429;
80% Identity: -