Lmar016506.1
Basic Information
- Insect
- Lasioglossum marginatum
- Gene Symbol
- -
- Assembly
- GCA_028455795.1
- Location
- CM052253.1:3231637-3236380[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.5e-05 0.0081 16.8 0.9 2 21 89 108 88 109 0.93 2 17 0.00047 0.044 14.5 0.3 1 21 112 132 112 135 0.90 3 17 0.00051 0.049 14.3 3.3 1 23 144 166 144 167 0.96 4 17 1.2e-05 0.0011 19.5 1.5 1 23 173 196 173 196 0.96 5 17 6.9e-05 0.0065 17.1 0.3 2 23 203 225 202 225 0.97 6 17 0.11 11 7.0 0.3 1 23 230 252 230 252 0.97 7 17 0.0026 0.25 12.1 0.1 2 23 261 281 260 281 0.96 8 17 1.3e-06 0.00013 22.5 0.1 1 23 287 309 287 309 0.96 9 17 2.4e-05 0.0023 18.5 0.1 1 23 315 337 315 337 0.98 10 17 8.7e-06 0.00082 19.9 1.3 1 22 426 447 426 447 0.96 11 17 0.37 35 5.3 0.4 1 23 475 498 475 498 0.89 12 17 0.00016 0.015 15.9 1.0 1 23 504 527 504 527 0.95 13 17 0.0033 0.31 11.8 3.4 3 23 535 556 533 556 0.95 14 17 0.0015 0.14 12.8 1.2 1 23 561 583 561 583 0.98 15 17 9.8e-06 0.00093 19.7 1.0 3 23 591 611 590 611 0.97 16 17 0.0022 0.21 12.3 0.8 1 23 617 639 617 639 0.98 17 17 7.4e-06 0.0007 20.1 0.2 1 23 645 667 645 667 0.98
Sequence Information
- Coding Sequence
- ATGCTCCCAATATCCCTGTACACGTTTAGTACCTCGCCGTTAAAGTATTCCAATTCCCCGCTGGACCCTTTAGGGGACGTTCCAAGTACGCACGAGTTCTCCCAGTTCAAAATCGAGAATGTGTACACCTTAGTGGACGACAAGAGATCGGTCAGGCCACCGGAAGGAGGAACGATGAACGTCGCTGATCATCTTGCCAAAGACGAAGCTGCAAGAAGCCAAGTTGTACCAGCACCGTACAACGGGAAAGGCCGCAGGCCCCTGTACTGTGATCGTtgtggcaaagtgttctaccggaagacgcacatgctgaagcacatactgtcgtacaaatatacgtgcagcacctgcgacaagccgttcCGACTGAAGAGGGAGTTGATCATGCACTCGGAAGCGGAGCACGGGCATCTAGAGCTGAcggagctgtacacgtgcactgactgcagctacaagaccccgatgaagagcacgttgagaacccatattctccggcatcacagcaccgagtactcgtacttctgcaagatctgccagcgggggttcaaggtgaagagcgacatgaaccagcacatgaggctgatgcactgcgccgatcgtgtcatcaagtgcaacatctgcaacgccacgttcaacaacgacacggccatgcagaatcacatgaggagcatccacaacagcttttattaccaatgcgtgcaatgcaggcgatacatggcgtcgccagagagcctcgagcaacacaagcaatggcacgcggagcagaagagcgctagcataacatgcccgaagtgtggcaaagtactccggggtcgcacacttgcggcgcacctgcgagtgcacactggccagaaacctttcacctgtccgatctgcgggaaatccttccgcaggctcagtcccatggagaggcacgttgtcatacataccggcaagaagccgtacgtctgcgacgtttgcggacaaatgttcgcgcaaaggcccggcctgctctcccacaggaaacgacatcctggaccactgccccctctgccagtagtgtccattaaaaacatagttaaagacttTATCGTGGCGTACAGCTGCGTGAAACACGATTTACTGAACGATCCTCTGGTGGATCCTCTGATGGATCCGGACAACAAACACGCTGTAGCGAACCGAGGGTCTCGCTTCTCTCTGCGAAGATGCAAAGTAGAAAACACTGATGACGATTGGCCCTCGCTGACGTCGCCAAAGATGTCATCAAAGATAAGATTCAACGGAGGCGAACCCTTCGAATGCGATCACTGCAACAAACAGTTCTATCGCAAGTCTTCGTTGGCGGTGCACGTGAAAACGTGTAAGCAACGTGTGTTCTACGATCTACGAGCGTGGTACGACGGGAAGATACGGATCGACAAGAAATGCGAGCCGAATACGTATCGGtgtacgatctgcgagttcaggggcaaggacaagttgacggtgacgaaccacgtcatcgacaatcacagcagcaccgtgccctacaattgcacgatgtgcaccgagagtttcaggctgaagaacgaactgaggcagcacatatatgtgatgcacaccgattcagcgccttcctgttgcaacgtttgcggaaaatttttcaaaaaggggtacgctaagagggcacacatgagatacaagcacaacaatacaaatttcaagtgcagaatatgcaaacgtagcatgttcagtaagatcaacttggagcagcatatgctttggcacgagaagatggatgaggtagcgtgtcccttgtgtggcatgacattcaaacggaaaaggcatctcgcgggccatatgtacatgcatgaggacttcaaaccgtactcctgtccattctgtgtcaaatcctttcgctggagaagctctcaggagcaacacatactgacacacactaccttgagaccgtatatctgtaacatttgcggagtgagcttcactcagaaggcgactttgcttggtcacagaaagatacatcctggacgactgccgccattgccaaggataAACGTGGGGAAGCTCATTATGGACTATATTCAAGAATTGCAGGCAGTATCTAGGCAGTTTCAGGAGAATCCAGGAACAGAGGATGGTGTGGAGCTAATTGAACCGAAAGTGGAAGTGTTGGACTGA
- Protein Sequence
- MLPISLYTFSTSPLKYSNSPLDPLGDVPSTHEFSQFKIENVYTLVDDKRSVRPPEGGTMNVADHLAKDEAARSQVVPAPYNGKGRRPLYCDRCGKVFYRKTHMLKHILSYKYTCSTCDKPFRLKRELIMHSEAEHGHLELTELYTCTDCSYKTPMKSTLRTHILRHHSTEYSYFCKICQRGFKVKSDMNQHMRLMHCADRVIKCNICNATFNNDTAMQNHMRSIHNSFYYQCVQCRRYMASPESLEQHKQWHAEQKSASITCPKCGKVLRGRTLAAHLRVHTGQKPFTCPICGKSFRRLSPMERHVVIHTGKKPYVCDVCGQMFAQRPGLLSHRKRHPGPLPPLPVVSIKNIVKDFIVAYSCVKHDLLNDPLVDPLMDPDNKHAVANRGSRFSLRRCKVENTDDDWPSLTSPKMSSKIRFNGGEPFECDHCNKQFYRKSSLAVHVKTCKQRVFYDLRAWYDGKIRIDKKCEPNTYRCTICEFRGKDKLTVTNHVIDNHSSTVPYNCTMCTESFRLKNELRQHIYVMHTDSAPSCCNVCGKFFKKGYAKRAHMRYKHNNTNFKCRICKRSMFSKINLEQHMLWHEKMDEVACPLCGMTFKRKRHLAGHMYMHEDFKPYSCPFCVKSFRWRSSQEQHILTHTTLRPYICNICGVSFTQKATLLGHRKIHPGRLPPLPRINVGKLIMDYIQELQAVSRQFQENPGTEDGVELIEPKVEVLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00862036;
- 90% Identity
- iTF_00862036;
- 80% Identity
- -