Lmar016505.1
Basic Information
- Insect
- Lasioglossum marginatum
- Gene Symbol
- -
- Assembly
- GCA_028455795.1
- Location
- CM052253.1:3218035-3228669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.12 11 6.9 7.6 1 23 10 33 10 33 0.96 2 21 4.1e-06 0.00039 20.9 0.3 1 23 39 61 39 61 0.97 3 21 0.0078 0.74 10.6 3.5 1 23 67 89 67 89 0.97 4 21 0.00059 0.056 14.1 0.3 1 23 95 117 95 117 0.97 5 21 5.5e-06 0.00052 20.5 2.9 1 23 123 146 123 146 0.97 6 21 0.0014 0.13 13.0 1.9 1 23 162 185 162 185 0.96 7 21 0.008 0.76 10.6 0.6 3 23 195 215 193 215 0.95 8 21 5.3e-07 5.1e-05 23.7 0.5 3 23 223 243 222 243 0.97 9 21 8.5e-06 0.00081 19.9 1.9 1 23 249 271 249 271 0.97 10 21 5.2e-05 0.0049 17.5 0.7 1 20 277 296 277 298 0.95 11 21 0.0035 0.33 11.7 5.4 1 22 382 403 382 403 0.97 12 21 0.025 2.3 9.0 0.6 2 23 461 483 460 483 0.96 13 21 8.4e-05 0.0079 16.8 1.0 1 23 489 512 489 512 0.97 14 21 4.5 4.2e+02 1.9 0.5 2 23 518 539 517 540 0.89 15 21 2.4e-05 0.0023 18.5 0.4 1 23 545 567 545 567 0.98 16 21 0.0023 0.22 12.2 0.4 2 23 574 596 573 596 0.94 17 21 8e-05 0.0075 16.9 2.1 1 23 617 640 617 640 0.93 18 21 0.0026 0.25 12.1 0.1 1 23 651 673 651 673 0.95 19 21 0.01 0.95 10.3 3.6 1 23 679 701 679 701 0.94 20 21 6.2e-07 5.8e-05 23.5 1.1 1 23 707 729 707 729 0.98 21 21 4.8e-05 0.0046 17.6 0.3 1 21 735 755 735 756 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGGTCAACGTCTCGAGCGATCCACGAGTGCGTGAAATGCGGCGCCTGTTTCTGCCACACGAGAAAGCTCGTGGAGCACCTGAAGAACTTGCACGGGATCGACAAAGCGTTCAGCTGCGACGAGTGCGGCAAAACGTTCAGAAGCCCGATGAACATCGCTCGTCACAAGCTGATCCACACAGGTTTGAAACGATTCGCTTGCGACCTGTGCGATTACAGATCGAACCAGAAATCGAACCTCGAGTGTCACCGGCGAAGACACTCGAAGGAGTACTCCTTCGAGTGCAAGGAATGTGGGAAAGGATTTTTCCTGAGGACGGAGTACCTAGAGCACGTGAACGTTCACACGAGGAAGGAAGTGTACCGGTGCGAGCACTGCAGCAAGTCTTATCCGTACAAGAAGAACCTGATGGCACATCTGAGGCTGCAGCACGCGAACGTTTTACCCGTCGATTCGAAGAGCGAGACGGGGCACAAGCACGTCTGCAGGATTTGTTTGAAGAGCTTCGCCCAGAAACTGTTGCTCGGAAGACACCTGAAGAAACAGCACGGCCTGTGCGAGAAGAGCGAGCATCTATGCGATCTATGCGGCGCGGTGCTGTCCTCGAAGAGAAGGCTGATGGCGCACCGGCGCGGCCACGTGAACGAGAAGGTCGCGATGTGCAATCTGTGCGGCAAACAGTTCGCCAGCAAGGAGAACCTCACCATTCATCAGCGGATACACACTGGCGAAAAGCCCCACGTTTGCACGCAGTGTGGCAGAGGCTTCACACAAAGAACCTCTTTGATCTTGCACCTCAGGTACCATTCCGGAGAACGGACCTATCAATGCGACGATTGCGGAAAGGGATTCGTCTCCGGCAGCTTCCTCAAGAAGCACCATCTGCAGTCTAATGATTACATTCTATGCCCTAAGCGTCACGCTTTAACGAGATCGCATTTGGTCTGTTTTAGTTTACTGAAAGATCCTCCGGTGGACCCTCTGAAGTATCCGGACAACAAACTAGCTGTAGCGAATCGAGGATCTCGCTACTCTCTGCGAAGATGCAAACTGGAAGACAAAGTAGATGACGTTTGGCAATCGCTGAATCAAATCGTGCCGGCGCGATCAAAGATGTCATCAAGATTAAGCGGACCCTTCGAATGTGATCACTGCAGCAGAGAGTTCTATCACAAGTGTTCGTTGACGATGCACGTAAGAACGTGTAAGGGTCGCAAGATCGACGATGAGGAGAATCAAATGTACGACAACAGGATCCCTAATTCCAGCCACTGGATCACTGATCCTGTCAAGCACGAGGATTGCGACGAATTCAGAATCAAGAGCCTTGACGTTCTTCTGGATCCGGAACAAAAATTCGAGGGTAACGAGAAAGTGTGCGACCTTTGCCAAGAAAAGTTCCACTTCGCGACCAGGCTGGTAGCCCACTTGAGGATCGTCCACGGTATCCATAGGCCTTTCAAGTGCGCCACCTGCGAGAAAACATACCCGCAACAATTTATGCTGAACGCTCACGTGAAAAAATCCCACACACCGAAAACAACCCCTTGCGGCCAGTGCAGTTTTATGGGGGTGAACGTGATCGACGTGGAAAGGCATACAAAGCGGCATCACAGAGACGTCAAGTACACCTGTGAAATCTGCAGCGAGAATTTCGTTGACAAAGACTCGCTGATGACGCATACGACCATGCACAACTTTATGCAGTATCAACAGTGCAACGCTTGCGGCACCACATTCGATGACGTGTACAGTCTGAAGGAGCACAATCGACTCTATCATTACGACCCGGCGGCCTTGATGCAGGAGAAGATGAACGAGGGCGGCCAACAGTCTTCGATGCACAAGTGCGACGTTTGTGGGAAAGTCTACAAATACAAGTCGGTGCTGAAACAGCACAAGGTGAAGGCACACGGTGACACGCCTAATTACGAGAGACGGCGTTACCTGTGCGCCCTTTGCGGCAAAGAACTGAAAACCGCGAAGGGTCTCGAGATCCACAATCGTTCgcacacaggcgagaaaccgtacacttgcgaggtgtgtggcaagtgttttgcttgcgagactctgctcagaacacacaacgtcactcacacgggtgaacgaaagtactcgtgcgatcagtgcggcaaagctttcactcagagatcgacgttggtggttcacaaacgctatcacaccggcgaacgaccctacgtttgcacccgctgcgggaaaggattcgttacgaggaccgttttgaacactcatatgaagTCCTGTCGCTGA
- Protein Sequence
- MRRSTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDKAFSCDECGKTFRSPMNIARHKLIHTGLKRFACDLCDYRSNQKSNLECHRRRHSKEYSFECKECGKGFFLRTEYLEHVNVHTRKEVYRCEHCSKSYPYKKNLMAHLRLQHANVLPVDSKSETGHKHVCRICLKSFAQKLLLGRHLKKQHGLCEKSEHLCDLCGAVLSSKRRLMAHRRGHVNEKVAMCNLCGKQFASKENLTIHQRIHTGEKPHVCTQCGRGFTQRTSLILHLRYHSGERTYQCDDCGKGFVSGSFLKKHHLQSNDYILCPKRHALTRSHLVCFSLLKDPPVDPLKYPDNKLAVANRGSRYSLRRCKLEDKVDDVWQSLNQIVPARSKMSSRLSGPFECDHCSREFYHKCSLTMHVRTCKGRKIDDEENQMYDNRIPNSSHWITDPVKHEDCDEFRIKSLDVLLDPEQKFEGNEKVCDLCQEKFHFATRLVAHLRIVHGIHRPFKCATCEKTYPQQFMLNAHVKKSHTPKTTPCGQCSFMGVNVIDVERHTKRHHRDVKYTCEICSENFVDKDSLMTHTTMHNFMQYQQCNACGTTFDDVYSLKEHNRLYHYDPAALMQEKMNEGGQQSSMHKCDVCGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCTRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -