Basic Information

Insect: Lasioglossum malachurum
Gene Symbol: -
Assembly: GCA_028455605.1
Location: CM052314.1:5728251-5731649[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.017 15.6 0.4 1 23 103 126 103 126 0.96

2 13 0.011 0.79 10.3 4.6 2 23 254 276 254 276 0.91

3 13 0.00079 0.058 13.9 2.2 3 23 321 342 320 342 0.96

4 13 6 4.5e+02 1.7 7.6 3 23 429 450 428 450 0.95

5 13 0.074 5.5 7.7 2.2 1 23 499 522 499 522 0.94

6 13 0.023 1.7 9.3 2.8 2 23 570 592 569 592 0.94

7 13 0.00021 0.016 15.7 0.1 3 23 616 637 615 637 0.91

8 13 0.0079 0.58 10.8 3.6 2 23 680 702 679 702 0.96

9 13 0.11 7.9 7.2 4.2 3 23 717 738 715 738 0.92

10 13 0.0001 0.0075 16.7 0.1 2 23 782 804 782 804 0.94

11 13 0.049 3.7 8.3 1.6 1 23 881 903 881 903 0.98

12 13 0.0043 0.32 11.6 1.0 2 23 917 939 916 939 0.96

13 13 0.0069 0.51 10.9 0.8 1 23 1013 1036 1013 1036 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.017	15.6	0.4	1	23	103	126	103	126	0.96
2	13	0.011	0.79	10.3	4.6	2	23	254	276	254	276	0.91
3	13	0.00079	0.058	13.9	2.2	3	23	321	342	320	342	0.96
4	13	6	4.5e+02	1.7	7.6	3	23	429	450	428	450	0.95
5	13	0.074	5.5	7.7	2.2	1	23	499	522	499	522	0.94
6	13	0.023	1.7	9.3	2.8	2	23	570	592	569	592	0.94
7	13	0.00021	0.016	15.7	0.1	3	23	616	637	615	637	0.91
8	13	0.0079	0.58	10.8	3.6	2	23	680	702	679	702	0.96
9	13	0.11	7.9	7.2	4.2	3	23	717	738	715	738	0.92
10	13	0.0001	0.0075	16.7	0.1	2	23	782	804	782	804	0.94
11	13	0.049	3.7	8.3	1.6	1	23	881	903	881	903	0.98
12	13	0.0043	0.32	11.6	1.0	2	23	917	939	916	939	0.96
13	13	0.0069	0.51	10.9	0.8	1	23	1013	1036	1013	1036	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCATGAAACGACGATATCGGACTTGACGGAATTGGACAGCGATGGGTCGAGTTGCGGGGAGCGCAGCGACGCCAGGAAACGTCTCCGCTTCGACGTCGACACGACGGGACCGAAGAAGAGGCGGAAACAAACGACGCCCGTAAGATTCTCCTCGACACTGACGAGCGGCGTGCACGAGGAGTCGAACGAGGACGAAGAGGAGGACGAGGGCAGCGAAGGTAAGCTGTCGACGCAGTCACCCATACCGAGCCAGTCGTCGATGCGCGGCGACGACAACCTGAATAACGAGTTCCGCTGCCAGTATTGTAGTCAGTTTTTCGACAGCAACGCTGCGTTGAACGCGCATCTCGATAGCGAGCACGGGTCCGCGGCTCGGCTAGCCGGTCCCCCGAATCGAACTGGCTCGCCGATCGACGCGATCAAAGCGGAACCGCCGCCGCAGCAACCGGACCAATCCGAGAACCCCGTGAACCTGCTCAGCGTAAAGAGCTTCGCGACCAATTGGCTAAGCGCGTCGTCGGGCCAACACGTGCAATCGCAGATGCAAACGCAAAACGAGGAACTGTGGCCGAGTCCCGTGAACCAGCTCTCCGCGTTACCGAGCCATTTGCAAACCCTGCAAGGGTTTCCCGGCGCGTTGGCGCAGTATCTACCATTGCCCGCGTTCCCGCTAACCGATTCTAGCCACATAGTCCGTCCGCCGATGGGACAGACGCCGATGAGGATCTTCAACCCGGACGCGTACTGCGACCTGTGCAACAAAGAGTTTTGCAACAAGTATTTCCTAAAGACGCACAAGGCCAACAAGCACGGGATCTACGTCGACTCGCCGGGACCCAGCACGGCGGACAATAACCTTACCGCGCCGCTCTATCCGGCCAACTTTCCCAACAGCATGATCAAGCTGGAGCCACCCGCGACCCCGCCCGCGCCAACCGTGGCTTGCGATCTCTGCCAAAAACGCTTCAAAAACGAGGACTCGATGCGCAAGCACAAACAGAAGATGCACACCGAGCTGCCTGATCATTCGCAGGAAGCGACGCAGATGATTTTCTCGCAGAACGAGGAAGACAGGGAGCCGACCCCGAGAGACAGTCCGGGCGGCATGGAGACGCTATTCAAGCAAGAGTACGGGGTCGAGCAGGAAGACGCGACGTTCATGCCAGCGCCCAGACACCTATCGCCTCAATCGATTCAGCAGGCGAGGGACGCCGGATTTAACGCCGATCGGCTGCGTCGTTTAGGAGTCATAAATCCGGAAGCGTTCTGCGAGATATGTTGCAAAGAGTACTGTAATAAGTATTTCCTACGCACGCATAAAATGAAGAGGCACGGGATCTCCGTTCAGGAGAACGAGAAGTCGCCGAGCAACCCAGGATCCGCGGCTACCTGGCATCAAGTGCAGACCAGCCCTTTGAATCTGATCGTGGCGGAGAGCGCGTGCAGCACCGAGTCGAACGAACGCGCAGGCGAGGATTACGAATGCAAGACCTGCGACATACGGTTTCAGACGATCGGTTTGTACCAGGCGCACTGTCGGAAGATGCACGAGAGCGAGGAGCAACAGTCGCCGAAACAGGAGAGCGACCTGGAACAGCCGGATCAACGGAACGACTCGATCTCCGAAGATCTTCAGAAGCTGCAGACGATGCTGCTGCAGTTGAACGGGCTGAAGTCTGGCAAAGGCCTGTGCTGCGCCGTCTGCGGCAAAGATTGCGACAGTAGAACAGCCTTGCACATTCACATGGTGACGGAGCACGGTGCCATCGGAGAAGACTCCAGATCCTCGCCGCAGGATAAGTCTCCCTTAACCACAGCCTCATCTTTCTGCACTCTATGCGGCAAAGAGTACCCGAATCAAGACGCTCTCCGAAGACACGTCGCGGAGGACCATCAACCAGCAGCGATCTCGACTTCCGTTCCCCATACACCGACAACTACAGCCACGGTGACCAATTCGACTCCGACCAGCCAGACGCCGACCGAGAAGAAGGTGATGTCGATGACGCCGACCTCGAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAAAGGATGCACGGCATCGAGATCGAGAACGGCGCCCAGATCGGCGGAGTGATCTGCAACATCTGCAACAAGGAATTATGCAGCAAGTACTTCTTGCGAGTTCACAAGCACAACACTCACGGGATCGTGGACGAGAACACGCCGAGCTCGACGAAACAAGAGGCTCACGACCCGGTGAGCACGGACGACGCCCTAAAGCCGGAGCACCTCGGCGATCTCAGTCACAGATACTTCACTCACTTCACCGAGGTCTGTCCCATTTGCAACAGAAGGTTCCGCAGTATCAAGTGGCTGAAGGCGCACTTGATGGGCGACCATGGGAAGATCGGCATCGACAAGTGGCGCGAGATGGAACAGCAATATCAAGCGAGCAAATCCGGCAGCCGTGTATCGAACCCCGCGAAAAACCATCCGAACTCGAACTTGAAGATACCAAATGGATTCGATATACCGCAGCAGATCAAGTCGGCCGAGTACGCCGGCCTGGGCAATCAAGTGCTGTCGAATTTGCTGGGATCATCCTCGGAGGATCAGCAGCTGAAAAGCTACCGTTGCTCTTATTGCAATTTCACGACGACCGTGTTACCGTTCCTTTTCCTACACGAGCGATCCCACGTGAACGCGCAGGAGAGCACCGAGGGCGAGAAATCGTTGCAGTGTCCGATCTGCTCGCAGGGTTTTCACCAGCCCGAGGTGTTGCATCAACATCTACTCACGACGCACCAGTTCCCCGCGTTGCTGTCTCATTTCCAGCCCCCGGTTCTCAATAATTTAGGGCTGGACATGGAGAAGCTGGCGGAAGCGAAAGAGAAGTTCGACCAGGAGACAAAAGACGACCGTACGGAGAGCAATCCGCAAGTCACTGCCAATCAAACGATCCCGGAATCGGTCAGGAGCCAACGACAGGAGGACACGGCGGTCCAGGTGACTCCTCAGGGTGTGTACAAGTGCGCGCAGTGCGGCTACGCGACGACCAATCTGAATCGAATCAAGAAGCACGTGAGGAAGGATCACAAGACGATCGGCGGCGATCCCACGGACAGCGTGCTCGCAGAACTCAGCAGAACGCTGAAGGACGTCGCGAACAGACACAAGATGCCGGCCTGTTACGCGATGCCGCAAGATATGAATTCGAACCCCGACAAAACGATCATGCAGCCGTTTTTGATAGAGGAACAGGAGATTATGCAAACCGGCGAGGAGTCCAATTCGGAGAAACGATTCGCACCGGCGTTGGTTTATTTGCCGGTGAAATCGCGGATTAACAACACGCTGACCACCTCGTTCACCCTGAGCCCCGCTTGA
Protein Sequence: MSSTMAHETTISDLTELDSDGSSCGERSDARKRLRFDVDTTGPKKRRKQTTPVRFSSTLTSGVHEESNEDEEEDEGSEGKLSTQSPIPSQSSMRGDDNLNNEFRCQYCSQFFDSNAALNAHLDSEHGSAARLAGPPNRTGSPIDAIKAEPPPQQPDQSENPVNLLSVKSFATNWLSASSGQHVQSQMQTQNEELWPSPVNQLSALPSHLQTLQGFPGALAQYLPLPAFPLTDSSHIVRPPMGQTPMRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTADNNLTAPLYPANFPNSMIKLEPPATPPAPTVACDLCQKRFKNEDSMRKHKQKMHTELPDHSQEATQMIFSQNEEDREPTPRDSPGGMETLFKQEYGVEQEDATFMPAPRHLSPQSIQQARDAGFNADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGISVQENEKSPSNPGSAATWHQVQTSPLNLIVAESACSTESNERAGEDYECKTCDIRFQTIGLYQAHCRKMHESEEQQSPKQESDLEQPDQRNDSISEDLQKLQTMLLQLNGLKSGKGLCCAVCGKDCDSRTALHIHMVTEHGAIGEDSRSSPQDKSPLTTASSFCTLCGKEYPNQDALRRHVAEDHQPAAISTSVPHTPTTTATVTNSTPTSQTPTEKKVMSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSTKQEAHDPVSTDDALKPEHLGDLSHRYFTHFTEVCPICNRRFRSIKWLKAHLMGDHGKIGIDKWREMEQQYQASKSGSRVSNPAKNHPNSNLKIPNGFDIPQQIKSAEYAGLGNQVLSNLLGSSSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNAQESTEGEKSLQCPICSQGFHQPEVLHQHLLTTHQFPALLSHFQPPVLNNLGLDMEKLAEAKEKFDQETKDDRTESNPQVTANQTIPESVRSQRQEDTAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKTIGGDPTDSVLAELSRTLKDVANRHKMPACYAMPQDMNSNPDKTIMQPFLIEEQEIMQTGEESNSEKRFAPALVYLPVKSRINNTLTTSFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966247;
90% Identity: iTF_00024826;
80% Identity: -