Lmal011484.1
Basic Information
- Insect
- Lasioglossum malachurum
- Gene Symbol
- -
- Assembly
- GCA_028455605.1
- Location
- CM052315.1:1329448-1331804[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00014 0.01 16.3 2.7 1 23 293 315 293 315 0.97 2 12 0.00018 0.013 15.9 1.8 1 23 319 341 319 341 0.98 3 12 0.0014 0.1 13.1 4.0 3 23 348 368 346 368 0.96 4 12 0.00023 0.017 15.6 2.7 1 23 422 444 422 444 0.98 5 12 0.00086 0.064 13.8 1.4 1 23 449 471 449 471 0.97 6 12 0.00024 0.018 15.5 1.5 1 23 522 544 522 544 0.98 7 12 0.00031 0.023 15.2 0.9 2 23 552 573 551 573 0.97 8 12 1.1e-06 8e-05 22.9 2.1 1 23 583 605 583 605 0.96 9 12 0.00024 0.018 15.5 1.6 1 23 611 633 611 633 0.97 10 12 0.00017 0.013 16.0 0.7 1 23 639 661 639 661 0.98 11 12 5.2e-06 0.00038 20.8 2.0 1 23 667 689 667 689 0.96 12 12 9.2e-05 0.0068 16.8 0.3 1 22 695 716 695 716 0.96
Sequence Information
- Coding Sequence
- ATGACAGAATATTTCAATTTACCGATTAACATGGATAGAATATGCAGAATCTGCCTTGCAGAGGGTACCAATCTGTCCCCTATTTTTACTATGGATCAGGACATGAACGACTTCTCGTGTCTTCCTCAAAAGATACAGATATGTGGGTCGATCGAGATCCACGAGCAAGATGGTCTACCCTCGTTAATTTGTGATATCTGTATTTATAAAGCGAGTGTTGCTCACGAGTTCAGGCAACAGTGCCAGCATTCGGATGCTAAGTTGCGAATGTATTATAATAAGCCAGCAAAGTCTACTATTGTGGACACATGCACTCAGACAGACTTGGAGATAGAGCCAATGTTATCAAAGGAACAGGAAGTTAGTCAAGACGACTACTATGTGAAAGAAGAGATGCAGGCAGCTGCTGCCAATTCTCAGGAGTACATACATAGTAACTCATATTCGAGAGATGAGTCTGATTTGAGCACTGGTCAAATCGATATACCAAGCGACAAGCTGTTTATATGCTCGATTGGTTTTGAAGGTACCAAGGAGATTGAAAAGGAAGCCTGTATCTCGGAGAACAATTTAGAGACTTCCCTTAGTCAGGAAGACGGTAATGACCTTCCAGAAACCATAGATATTCAGTCCAAACCAGATGAAAATCAAGCTATCGACGATTCAAATGTGCAAGAATCACTGAAAAAACAGGACGATGAATTTCTTGAGGAAAGTACACTGAATGAAAATGTTACAGAAGAAGAGAAAGTTCCACAGAAGCGTACATCTACTAGAAAATTAAAATCAGTGTCCAATAAAACTTACAGCGAAGATGAAATAGACGATAGTTATTACGATCCAAACAGCGATGGTCATGATGCTGGGGAGACAAAGTTCAAATGCAAAGTGTGCTCCAAATACTATAGCACGCAGAAGGGCTTGAAAAAACATTCTCTCGTCCACGAAAAGAAATTCAAATGTGATATCTGTTTGAAAATGTTCTATAAGCAAGAAAATATGGAGACCCATAAAAAGATACATACGTCAAAACCTCTTGCCTGTAAATTATGCCATGCATGTTTCTCTAAGCCCCAAAGCTTTGCCCGTCACCTAAAATCGCATACAGAAAAGTTGAACAATATGATCAAAGAAATCAACACAGACGAACAAAAAGACAACAAGGAACCAAAGAAGGAAATGAAGATAGAAGACGATACAGACGATGAGACTGGCACTGTAAATGAAGTTGATTTTGTTGAATTTGAGAATGCACCTGAATTGTACAAATGTGATATTTGTAGTCAGTATTGTTCTACCCTGAAAAATCTGAAAAGACATGCTCTGGTGCATGGAGATAAAAAATATTCCTGCACTGTTTGCAAGAAATGGTTCTTCAGGCCAGACACGCTAAAAAAGCATGCTGAGAAACATGGTCACGGGTTATTAGACAATTTAGTGGATAACAATAAATTTTTTGACTCCGACGATGACTCCTTTCCTAGTACTACGCAGCAGACCAATAATTTACAAGAGAGTGAAAATGTTAAAAAAGAAGAGAGCGACGAGGATGGGTCTGGGGAATACAAATGCCAACATTGTGATAAAATCATGGCAACGAAGAAGGGTCTCCGGCGTCATGTGGCAATGCATAAACCTAAACCCGAGCCAGTTACGTGTGAAATCTGTAGGAAAGTTTGTGCTAGTCAGGCTCGCCTCGTCCTCCATCAAAGGACACATAAGCCGAAAGAAAAAGTTCCAAGAGAATACCTGTGTCATATTTGTAGTAAAGTGTATCCAAGTAACTCTTCCCTCACCTACcatatgagaactcatactggtgtgaagccacatgtgtgcaaaacatgcaacagtggttttactaccacaaccagtttagcgaaccacatcaggattcacacaggtgacaagccgtttgtctgccatgtctgcagcgcagcatttgcagtcagttcagcctttagacgacacctgactaggcacaccggtgaagcaaattatctatgtaaaacctgtggcaaagcattcaaaagacttagcactctaaaagaacatacttatacgcactctggtgagaaaccatatgtttgcaaAACTTGTGGAGCCGCATACAGTCACAGCGGAAGCCTGTTCGCTCATCAAAAGCGTTGCAGAGTTCAGTACGCTGAGGATCCCTTGCAGATGGTTGTCGAAGACCATAGACATAATGTTGCACACCATATTCACGTGAATAATGTACAATCTGCAGTACGCTCACTTGCTGTGATAGGACAAATGTTTTAA
- Protein Sequence
- MTEYFNLPINMDRICRICLAEGTNLSPIFTMDQDMNDFSCLPQKIQICGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPAKSTIVDTCTQTDLEIEPMLSKEQEVSQDDYYVKEEMQAAAANSQEYIHSNSYSRDESDLSTGQIDIPSDKLFICSIGFEGTKEIEKEACISENNLETSLSQEDGNDLPETIDIQSKPDENQAIDDSNVQESLKKQDDEFLEESTLNENVTEEEKVPQKRTSTRKLKSVSNKTYSEDEIDDSYYDPNSDGHDAGETKFKCKVCSKYYSTQKGLKKHSLVHEKKFKCDICLKMFYKQENMETHKKIHTSKPLACKLCHACFSKPQSFARHLKSHTEKLNNMIKEINTDEQKDNKEPKKEMKIEDDTDDETGTVNEVDFVEFENAPELYKCDICSQYCSTLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDNNKFFDSDDDSFPSTTQQTNNLQESENVKKEESDEDGSGEYKCQHCDKIMATKKGLRRHVAMHKPKPEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYAEDPLQMVVEDHRHNVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625650;
- 90% Identity
- iTF_01071148;
- 80% Identity
- -