Basic Information

Insect: Lasioglossum malachurum
Gene Symbol: -
Assembly: GCA_028455605.1
Location: CM052312.1:8861013-8864629[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.11 8.1 7.2 7.6 1 23 10 33 10 33 0.96

2 20 3.8e-06 0.00028 21.2 0.3 1 23 39 61 39 61 0.97

3 20 0.0072 0.54 10.9 3.5 1 23 67 89 67 89 0.97

4 20 0.00054 0.04 14.4 0.3 1 23 95 117 95 117 0.97

5 20 5.1e-06 0.00037 20.8 2.9 1 23 123 146 123 146 0.97

6 20 0.0023 0.17 12.4 1.9 1 23 163 186 163 186 0.96

7 20 0.0074 0.55 10.8 0.6 3 23 196 216 194 216 0.95

8 20 4.9e-07 3.7e-05 24.0 0.5 3 23 224 244 223 244 0.97

9 20 7.9e-06 0.00059 20.2 1.9 1 23 250 272 250 272 0.97

10 20 1.4e-06 0.00011 22.5 0.7 1 23 278 300 278 300 0.99

11 20 0.023 1.7 9.3 0.6 2 23 340 362 339 362 0.96

12 20 7.7e-05 0.0057 17.1 1.0 1 23 368 391 368 391 0.97

13 20 4.1 3.1e+02 2.2 0.5 2 23 397 418 396 419 0.89

14 20 2.3e-05 0.0017 18.8 0.4 1 23 424 446 424 446 0.98

15 20 0.0022 0.16 12.5 0.4 2 23 453 475 452 475 0.94

16 20 7.4e-05 0.0054 17.2 2.1 1 23 496 519 496 519 0.93

17 20 0.0024 0.18 12.4 0.1 1 23 530 552 530 552 0.95

18 20 0.0092 0.68 10.5 3.6 1 23 558 580 558 580 0.94

19 20 5.7e-07 4.2e-05 23.8 1.1 1 23 586 608 586 608 0.98

20 20 4.5e-05 0.0033 17.8 0.3 1 21 614 634 614 635 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.11	8.1	7.2	7.6	1	23	10	33	10	33	0.96
2	20	3.8e-06	0.00028	21.2	0.3	1	23	39	61	39	61	0.97
3	20	0.0072	0.54	10.9	3.5	1	23	67	89	67	89	0.97
4	20	0.00054	0.04	14.4	0.3	1	23	95	117	95	117	0.97
5	20	5.1e-06	0.00037	20.8	2.9	1	23	123	146	123	146	0.97
6	20	0.0023	0.17	12.4	1.9	1	23	163	186	163	186	0.96
7	20	0.0074	0.55	10.8	0.6	3	23	196	216	194	216	0.95
8	20	4.9e-07	3.7e-05	24.0	0.5	3	23	224	244	223	244	0.97
9	20	7.9e-06	0.00059	20.2	1.9	1	23	250	272	250	272	0.97
10	20	1.4e-06	0.00011	22.5	0.7	1	23	278	300	278	300	0.99
11	20	0.023	1.7	9.3	0.6	2	23	340	362	339	362	0.96
12	20	7.7e-05	0.0057	17.1	1.0	1	23	368	391	368	391	0.97
13	20	4.1	3.1e+02	2.2	0.5	2	23	397	418	396	419	0.89
14	20	2.3e-05	0.0017	18.8	0.4	1	23	424	446	424	446	0.98
15	20	0.0022	0.16	12.5	0.4	2	23	453	475	452	475	0.94
16	20	7.4e-05	0.0054	17.2	2.1	1	23	496	519	496	519	0.93
17	20	0.0024	0.18	12.4	0.1	1	23	530	552	530	552	0.95
18	20	0.0092	0.68	10.5	3.6	1	23	558	580	558	580	0.94
19	20	5.7e-07	4.2e-05	23.8	1.1	1	23	586	608	586	608	0.98
20	20	4.5e-05	0.0033	17.8	0.3	1	21	614	634	614	635	0.96

Sequence Information

Coding Sequence: ATGCGAAGGTCAACGTCCCGAGCAATCCACGAGTGCGTGAAAtgcggcgcctgtttctgccacacgagaaagctcgtcgagcacctgaagaacttgcacgggatcgacaaggcgttcagctgcgacgagtgtggcaaaacgttcaggagcccgatgaacatcgctcgtcacaagctgatccacacgggtctgaaacgattcgcttgcgacctgtgcgattacagatcgaaccagaaatcgaacctcgagtgtcaccggcgaagacactcgaaggagtactcgttcgagtgcaaggaatgcggtaaagggtttttcctgaggacggagtacttggagcacgtgaacgttcacacgaggaaggaagtgtaccgatgcgagcactgcagcaagTCTTATCCGTATAAGAAGAACCTGATGGCACATCTGAGGCTGCAGCACGCGAACGTTTTGCCGGTCGATTCGGCGAAGAGCGAGACGGGGCACAAGCACGTatgcagggtttgtttgaagagcttcgctcagaaactgttgctcggaagacacctgaagaaacaacacggtttgtgcgagaagaccgagcatctgtgcgatctctgcggcgcggtgctgtcctcgaagaggaggctgatggcgcaccggcgcggccacgtcaacgagaagatcgcgatgtgcaatctgtgcggcaaacagttcgccagcaaggagaacctcaccattcatcagcggatacacactggcgagaagcctcacgtctgcacgcagtgcggcagaggcttcacacaaagaacctctttgattttgcatctccgataccattccggagaacggacctatcaatgcgacgattgcggaaagggattcgtctccggcagtttcctcaagaagcaccgtaagatacacGAGAAATCGCACCACTGGATCACTGATCCTGTCAAGCAGGAGGATTGCGACGAATTCAGAATCAAGAGCCTTGACGTCCTTCTGGATCCAGAACAGAAATTCGAGGGTAACGAGAAAGTGTGCGACCTTTGTCAAGAAAAGTTTCACTTCGCGACCAGGCTGGTAGCTCACTTGAGGATCGTCCACGGTATCCATAGGCCTTTCAAGTGTGCCACCTGCGAGAAAACGTACCCGCAACAATTTATGTTGAACGCTCACGTGAAAAAGTCCCACACGCCGAAAACAACCCCTTGCGGCCAGTGCAGTTTTATGGGGGTGAACGTGATCGACGTGGAAAGGCATACAAAGCGGCATCACAGAGAAGTCAAGTACACCTGTGAAATCTGCAGCGAGAATTTCGTTGACAAAGACTCGCTGATGACGCACACGACCATGCACAACTTTATGCAGTATCAACAGTGCAACGCTTGCGGTACCACATTCGATGACGTGTACAGTCTGAAGGAGCACAATCGACTCTATCATTACGATCCGGCGGCCTTGATGCAGGAGAAGATCGACGAGGGAGGGCAACAATCTTcggtgcacaagtgcgacgtttgtgggaaagtctacaaatacaagtcggtgctgaaacaacacaaggtgaaggcacacggtgacacgcctaattacgagaggcgtcgttacctgtgcgccctttgcggcaaagaattgaaaaccgcgaagggtctcgagattcacaatcgttcgcacacaggcgagaaaccgtacacttgcgaggtgtgcggcaagtgttttgcttgcgagactctgctcagaacacacaacgtgactcacacaggcgaacggaagtactcgtgcgatcagtgcggcaaagctttcacgcagagatcgacgctggtggttcacaaacgctatcacaccggcgaacgaccctacgtttgcacccgctgcgggaaaggattcgtgacgaggaccgttttgaacacccatatgaagtccTGTCGCTGA
Protein Sequence: MRRSTSRAIHECVKCGACFCHTRKLVEHLKNLHGIDKAFSCDECGKTFRSPMNIARHKLIHTGLKRFACDLCDYRSNQKSNLECHRRRHSKEYSFECKECGKGFFLRTEYLEHVNVHTRKEVYRCEHCSKSYPYKKNLMAHLRLQHANVLPVDSAKSETGHKHVCRVCLKSFAQKLLLGRHLKKQHGLCEKTEHLCDLCGAVLSSKRRLMAHRRGHVNEKIAMCNLCGKQFASKENLTIHQRIHTGEKPHVCTQCGRGFTQRTSLILHLRYHSGERTYQCDDCGKGFVSGSFLKKHRKIHEKSHHWITDPVKQEDCDEFRIKSLDVLLDPEQKFEGNEKVCDLCQEKFHFATRLVAHLRIVHGIHRPFKCATCEKTYPQQFMLNAHVKKSHTPKTTPCGQCSFMGVNVIDVERHTKRHHREVKYTCEICSENFVDKDSLMTHTTMHNFMQYQQCNACGTTFDDVYSLKEHNRLYHYDPAALMQEKIDEGGQQSSVHKCDVCGKVYKYKSVLKQHKVKAHGDTPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCTRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00862726;
80% Identity: -