Lleu012900.1
Basic Information
- Insect
- Lasioglossum leucozonium
- Gene Symbol
- -
- Assembly
- GCA_028454225.1
- Location
- CM052216.1:7533389-7539543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.021 1.5 9.5 0.2 2 20 140 158 139 160 0.93 2 20 0.23 16 6.2 0.0 3 20 169 186 168 188 0.92 3 20 0.9 63 4.3 8.2 1 23 205 228 205 228 0.91 4 20 0.00021 0.015 15.8 3.6 1 23 591 614 591 614 0.97 5 20 0.0021 0.15 12.6 0.8 2 23 647 668 646 668 0.95 6 20 0.75 53 4.6 1.0 1 22 804 825 804 825 0.94 7 20 0.0038 0.27 11.8 1.0 1 21 832 852 832 855 0.89 8 20 7.2 5.1e+02 1.5 3.1 1 22 865 886 865 888 0.89 9 20 1.5 1.1e+02 3.6 0.1 2 19 911 928 910 931 0.90 10 20 0.028 2 9.1 3.6 1 23 938 961 938 961 0.94 11 20 0.15 11 6.7 4.0 1 23 972 995 972 995 0.88 12 20 0.18 13 6.5 0.1 1 21 1028 1048 1028 1049 0.95 13 20 0.0004 0.028 14.9 0.2 1 21 1141 1161 1141 1162 0.95 14 20 0.0038 0.27 11.8 3.1 1 23 1169 1191 1169 1191 0.98 15 20 0.017 1.2 9.7 3.0 1 23 1201 1224 1201 1224 0.94 16 20 0.0076 0.54 10.8 0.1 2 21 1261 1280 1260 1281 0.94 17 20 0.00054 0.038 14.5 3.8 1 23 1288 1310 1288 1310 0.98 18 20 1.4 1e+02 3.7 0.1 1 23 1319 1342 1319 1342 0.86 19 20 0.046 3.3 8.4 0.2 1 23 1469 1492 1469 1492 0.97 20 20 0.0016 0.11 13.0 0.0 2 23 1514 1536 1513 1536 0.93
Sequence Information
- Coding Sequence
- ATGGCTCGAGTTTATGTATATGAACGCCCAGTCGATTCTGTCCTGGCGGATGTGGCCTTCTATGAGAAGCAGCACCCTCCTACTGGGGTGAAACAAGAGCCACGTGACACGGATGACAAAAGTCAGGACAGTACTTTGCCATTGGCAGATACTAATGCAAACAATACCACACCGGCTGAAACGACTGTTCAAGGGACACAACTGGTTGACGATGTAAATAACAAAGAGAATGAGCTTGTATCATCTACGAACCGTGCCGATAATTACAGATCGGGCACGGACGTGGTCAATACAGCGAAGCGTAAATGTTTAAGGGTGTCCGAGCGAGTGGTGCTACAACATAAAAGATCCTGTCGTAGCGACCTTGAACATAAATCTTCGGAATCAGTAAGCAAAAAAGTAGAAAAAGTGGGAGTGGAATGCGGCGTGTGTTACTTAAAGTTTACAACAGAGAAAGCACTTAAGCGTCATAAAGAATATTACCTTGAGATAGGCGGTCGTATATGTGATAGATGCCAAATGGCATTTCGATCGGTTGGCGCATTAGAAGCTCATAAATTGATAAATAAATGCAAGAGAAAATCAGAAGCGGACAGGAGAGGTGATAATAGGTATTCCTGTTGTTTCTGTAATCGCAGATTCTCGAAGAAACTATATTTACAGAGTCACGTGTTCCACACTCATACTGATTCGTTACCGATTATTATAAGTGAACCTAGTGAGTCTAGTGAAACTGATAAAAATAATGAAACTGATAAAGTCAATGAATCTGATACAGTCGATGAGTCTGATGATATCAGTGAACCAATATTGGCACAGAGCACTAGCGGTCACGTGGAAAGTCCTTCTGCACAAAAGGAAGAAAAGAGTCCAGTCGCCGGTAGCTCTACTAAAAGAATGAGACAAACGACTATGACAGAGTTCCTTTCACTATTCACCAAAAAAGAACTCGTTTCTCCAAAAAAGGTTGACCTTATAACAGAAACTCCGAAAAAAACAAGTGCTAGACGAACAGGAAGAATAACTGAGAAATTCAATGTTCACGAGGAAACTCCGAAAAAAGCTACACCTAAACAAAATGGAACAATAACAGAGAAATTCGATTTCCAGGCAGAAGCTCCGAAAAAGGTTAGACAAAACAGTGCAGTGGCAAAATTCGTTTCCAATCCTCGTAATGAGAAAACGCCGACTACCGGTGAAAGTTCTGGGTTAAGCAAAACTGGTAAGGAAAAAAAACCATTTGTCGAGATATACATGGGTTCCGATGAGATGGTGGCCTTATTGGATCCAAAAATTGAAATTGACGTAGGACATGAATATGTCGATTCTACGCCAAAGCATGGGTTCTACAACCTTAGACGCATAACAAGAAATCGACTGTTGAGTAACGAGAATAAACGAAATGTTTCTGGGATTAAGAGAAAACGTAATTCTAAGGGGCAGTTCGTTTGCCTGCCTATAGAGAAATCGACGGCTCAGACAAATGAGCAGCGACATGGGACCCAGTTCAAATGTAAAGACTGCACAGTTAATCTAGTTAGATGTGATATGGTTGTCAAAACAGAAAATGTCGATTATGTCCCGCCGACTCCGGTAGACGTGGAAGAAGATATCGAGGAGGTTTGGAGAAAGAAGATCAACTTAAAGAGAATCCACGTTCCATTAGTCAGACTGAACAGCCAGATAAAGGTAGAAGTTGACGATACGTTCCAGAATACAGAGAAGCTCAGTGTATCTCAACCTAACGTCAAAGCTAACTTGCGTAAGATATTCCGGTGCAAAGTCTGCTGGAAACACTTCTCCTCGAAGGAGAAGTTATACGATCATTTGAAAGTTACTCACGTGTTCTACATATCGAGTGTGTGCAGCGCTTGGTACAAATCTCGAGCCAGATTGCTGAGACACTACTTGCACCAACACTGCGTTTTAAAGCGCATGGAGTGCTGCGTATGCTTCGAGAAATTTGTATCGCCTGTGTTGTTAAAGCGGCACATGGATTTGCACTGCATTAAGGTGTTGCAATCAAAGCGCGACAAGCTATTCAATAAAGAGGCGGTCAAATGTAATATGAACTCTAGAACGAACTCGTGCGGGGCGTGCGGTAAGCAATTTTGGTTGGGTGCTTGCTTGAGCGAGCATCAACAGGTGTGTCATAAAATGAAGGCACAATTGAAGAAATTACAGAACGCTCAGTCTCCCGTGAAAAAGTCCCCAACAAAAAAAACTCTTGCGTCACCATCAGCTGTTGTAAGCGTTACAGTGCCGGAACAACACTCCAAAGGGTTATCTTCGGCCAAAAATCGTCTTCGTAGAACGGAATCATCGCCAGTAGCACAGCCCAAGAGATTTCTGAAAGGCGTCGCGTTCGTGAAGGGGTACAACATCTATAGTGGCATGAACAAAGAGAAGTTCCCCTGCACCACTTGCGGCGCACAGTTCCTGTCTTTCCAGAATTTATGTTTGCACGAACGAACTTACACTCAAGCCGCTACGCATGTCTGCAGGAGCTGCAATACCGCCTTCACCACACAAAAATTATTGCAAAACCACGTGGTAGCCACCCACATGATCGACATTTTAAAGAAGTACAAGTACTTTTGTACGTTCTGCACACAAGGCTTCCTAAAGAAGATCAATCTTCAGATCCACACGGGACACTTTCACGGTGGTCAAACGCCCATCATTCCCAAACCGTGGTTGGATACTACTTCCGACTGGGAGGTGGACACTGTGTGCAGCGTGTGCAATCTGATATTCGAATCCAGCGAACGGTTCATCGAGCACAACATGTACTATTACAAAGGACAGATTTTTACCTGCACGTTCTGCAACCAAACCTTCCGGGGTATGTACATGCTGAATCATCACAACAAGCTGGTGCACTACACGGAGGACATGACGAAACAGTATACGTACACGTGCAACATCTGCAACGAGGGCTTTACACAGGAGTCCCAGCACCACGCGCATAAATTGCACGTTCATTCGACAACGCCGGAATCCAACACGCGGTCCCTGCAAGATCATACCTATGCAATCGCGATTGGGATCGGAGGATTGACGAATGGTCCGGCGATGAGATACAACTGTGAGGTTTGCTACATGAACTTCATGGTGGAGGAGGACTTACGACAGCACCAGTTGGAGTACTCAAACACTGGCGACTATTTATGCAGCTACTGCGCCAGAAGATGTCCTACGGACAGCATTCTCAGCAAGCACGAAAGTTTGTCGCACACCTGTAGCAACTTCACCGACTGCTACAAGTGTCGCTACTGCCAGGAGGTACTTTCCACATGTACAGCGTTAAAATGCCACGAAATACACTTCCACCAGAAGATCTCTAGTCCTCAGATCAACAGCGATAATCAGCCAATCGTGAATCTGAGTGCAAAATCATCTGGAAACGTTGGGGATTCGTTCGTGTGCGAGATTTGTGACATGAAGTTCGTGACCATGGAGAAATTGAATCATCATATGTTAGAATACTCGAACGACGGTCTGTACAGTTGCCACATCTGTAGCCGGAGGTTCTCGGAGCTTTATCGCCTGGAAGTCCACAAGCTGAAGCACTCGAACTTGAACTTCATACTGTCTAAGCATCACTGCCCTATATGTCGTGAGGGATTTGCAAATCAAGTCAACGTTCGGACACACGTGATGCACTTCCACAAAAGCGAATCGACTGATCACCAGATAGAAAACGACGCGCCGACCTCGCAAGAAGTTGACCTCAACGTCGAAGTGGCTCCAAATAGCCCGTCGAAGACGAAGTCGACAAAGTGTCCCGAATGTCTGGTGTCGTACGATTCCGAGAGTGCTTTGAAAAGGCACCAAGCACGCTTCGCGAACAAAGGACAACATGTTTGCGAGCACTGCGGCAGGAAGTTCCAGTTGGCGAAGCTGCTGAAGGAACATTTGAGGAGGCACGCTGCCGGCATTCAACGCCTGAAGTACGCGTGTCCCGAATGCGACGATAGATTTGGTAATCCGGTGGCCAGATATCAGCATATCGTTCATCTTCATGGAAAGAGTAAGTGGAAAGGCGACGTACCTAGTGCCGTAAAGAGTCGGTACAATACTGAAGCTGCTGCAAAGAGATTAGAGGATTCCAGTGTATCGTGGCATACATCAGATACTTCGACATACCAGCTGATTTACACTGATGAACCTACTGCTACAACCAGACCCTTGAACAGATTAAGCGATTGTGAGGGAGGGTCCACATCATCAAATGATCAACTGATTTACGCTGGTGAACCTGTGGCTACAGCCAGTCTCGGGAACGGATTAAACGATGATCAGGAAAGACCTTCATCAACAAATGATCAGCAGACAGATATGTCTGTAGCGGCAGCTCGGCAAGAGAAACAACTTGAAAATTTAGAGGGGGACACTCCATACTACACTTGCCCCCTTTGCGATCGTAAGATCAAACTGCTGGAGACATTTGTGTCACATTTGAATGTGGAACACGGGAAGATGATCCAGGGGAACATGTCCGACTACATGTCTCAGTCTTTGACAGGACGCGTCATCAGCTGCTTGACCTGCGGGGTCACCTTTGCTACGGAAGGCGATCTCAAGATACATCTCAAGGACGCGCACGTGAGGATTTGCCCTACCAACACGGAAGACGCTGCCGATACCGCGGAGGATAACACAGATGTGGTGCAAATCATTTGGGAGAAGAAGCCGGACGCTGCCAAACAGTTCGGGGACCAGAGCGACTCGGAGGTTCATGTTCTGTGCTGGAGTTACCGTGCCCCGATCATTAACTATGACAAAACTGTCGCGAAGCTGGAATCAGCGGATTCGAGTGCTCATAATACCACTCTGAGAATCAAAGACTTTGCTAAATTGGTTTAA
- Protein Sequence
- MARVYVYERPVDSVLADVAFYEKQHPPTGVKQEPRDTDDKSQDSTLPLADTNANNTTPAETTVQGTQLVDDVNNKENELVSSTNRADNYRSGTDVVNTAKRKCLRVSERVVLQHKRSCRSDLEHKSSESVSKKVEKVGVECGVCYLKFTTEKALKRHKEYYLEIGGRICDRCQMAFRSVGALEAHKLINKCKRKSEADRRGDNRYSCCFCNRRFSKKLYLQSHVFHTHTDSLPIIISEPSESSETDKNNETDKVNESDTVDESDDISEPILAQSTSGHVESPSAQKEEKSPVAGSSTKRMRQTTMTEFLSLFTKKELVSPKKVDLITETPKKTSARRTGRITEKFNVHEETPKKATPKQNGTITEKFDFQAEAPKKVRQNSAVAKFVSNPRNEKTPTTGESSGLSKTGKEKKPFVEIYMGSDEMVALLDPKIEIDVGHEYVDSTPKHGFYNLRRITRNRLLSNENKRNVSGIKRKRNSKGQFVCLPIEKSTAQTNEQRHGTQFKCKDCTVNLVRCDMVVKTENVDYVPPTPVDVEEDIEEVWRKKINLKRIHVPLVRLNSQIKVEVDDTFQNTEKLSVSQPNVKANLRKIFRCKVCWKHFSSKEKLYDHLKVTHVFYISSVCSAWYKSRARLLRHYLHQHCVLKRMECCVCFEKFVSPVLLKRHMDLHCIKVLQSKRDKLFNKEAVKCNMNSRTNSCGACGKQFWLGACLSEHQQVCHKMKAQLKKLQNAQSPVKKSPTKKTLASPSAVVSVTVPEQHSKGLSSAKNRLRRTESSPVAQPKRFLKGVAFVKGYNIYSGMNKEKFPCTTCGAQFLSFQNLCLHERTYTQAATHVCRSCNTAFTTQKLLQNHVVATHMIDILKKYKYFCTFCTQGFLKKINLQIHTGHFHGGQTPIIPKPWLDTTSDWEVDTVCSVCNLIFESSERFIEHNMYYYKGQIFTCTFCNQTFRGMYMLNHHNKLVHYTEDMTKQYTYTCNICNEGFTQESQHHAHKLHVHSTTPESNTRSLQDHTYAIAIGIGGLTNGPAMRYNCEVCYMNFMVEEDLRQHQLEYSNTGDYLCSYCARRCPTDSILSKHESLSHTCSNFTDCYKCRYCQEVLSTCTALKCHEIHFHQKISSPQINSDNQPIVNLSAKSSGNVGDSFVCEICDMKFVTMEKLNHHMLEYSNDGLYSCHICSRRFSELYRLEVHKLKHSNLNFILSKHHCPICREGFANQVNVRTHVMHFHKSESTDHQIENDAPTSQEVDLNVEVAPNSPSKTKSTKCPECLVSYDSESALKRHQARFANKGQHVCEHCGRKFQLAKLLKEHLRRHAAGIQRLKYACPECDDRFGNPVARYQHIVHLHGKSKWKGDVPSAVKSRYNTEAAAKRLEDSSVSWHTSDTSTYQLIYTDEPTATTRPLNRLSDCEGGSTSSNDQLIYAGEPVATASLGNGLNDDQERPSSTNDQQTDMSVAAARQEKQLENLEGDTPYYTCPLCDRKIKLLETFVSHLNVEHGKMIQGNMSDYMSQSLTGRVISCLTCGVTFATEGDLKIHLKDAHVRICPTNTEDAADTAEDNTDVVQIIWEKKPDAAKQFGDQSDSEVHVLCWSYRAPIINYDKTVAKLESADSSAHNTTLRIKDFAKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -