Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052210.1:10764427-10766574[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.056 4 8.1 0.7 2 23 138 159 137 159 0.93

2 8 0.0093 0.66 10.6 3.2 2 23 231 252 230 252 0.90

3 8 0.00015 0.01 16.2 0.9 1 23 400 422 400 422 0.98

4 8 2.1e-06 0.00015 22.0 1.2 1 23 428 450 428 450 0.98

5 8 7.3e-06 0.00052 20.3 2.4 1 23 456 478 456 478 0.98

6 8 8.3 5.9e+02 1.3 1.0 12 23 480 491 479 491 0.89

7 8 0.00096 0.068 13.7 5.5 1 23 497 519 497 519 0.96

8 8 8.9e-06 0.00063 20.1 5.5 1 23 525 547 525 547 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.056	4	8.1	0.7	2	23	138	159	137	159	0.93
2	8	0.0093	0.66	10.6	3.2	2	23	231	252	230	252	0.90
3	8	0.00015	0.01	16.2	0.9	1	23	400	422	400	422	0.98
4	8	2.1e-06	0.00015	22.0	1.2	1	23	428	450	428	450	0.98
5	8	7.3e-06	0.00052	20.3	2.4	1	23	456	478	456	478	0.98
6	8	8.3	5.9e+02	1.3	1.0	12	23	480	491	479	491	0.89
7	8	0.00096	0.068	13.7	5.5	1	23	497	519	497	519	0.96
8	8	8.9e-06	0.00063	20.1	5.5	1	23	525	547	525	547	0.99

Sequence Information

Coding Sequence: ATGTTTATCGTGACGAAAGAGATCGACAGCGAGAACATCGGTAAATTATGTCGGACGTGTTTAAGAGAGGATGGCGACAAAATGATTTGTTTGTTCGTGGGACCGGCTGGCTCGTCTCTCGCCGCAAAGTTGCGGTCTCTGTCGTGTTTGGACGTATGGCAGGGCGACGGCCTCCCGGAGAAGATGTGCGATCGCTGCGTGACCAGAGCAGAGTCCGCGTTGCTCTACAGGGAACAGTGTCGAGCCGCTGACAGAGCGTTGAGACAAGCCGCTGTAAAGGTATCCGGTCTGTCAGCTTACGCCACGGTTCCTGGATGCAAGCTGTACCAGCAGAACCAAAGCTTCCAACCGGTCCCGGTCCCGGTTCCAGTTCCCGTTCCGGTTCAGGTTCAGAATACTCACAAAACGCTGAAATGCATCGAATGCGGCATCCCATGCGCGACTTATCAAGAACTATGTGCGCACGGTAGATCGCATTTGCCATTGATGCAAGAGAATATGCCGGCGCAGCGTGTGCGCATAGCAGAATCACAGAATCCCTATCTGAACTTTAATTTTAGCCATTTCAGTTCGAATCTGAGCGGAGAGACGCTACCAAACCCTCCGCTGTCTCCCTTGATCAGATCGAACATGCTTCCACAGATGATCCCGATGAACGCCGAGAATTCTAGCCGGGCCGCTTGCGCGTTGCACTGTTCCCTGTGCAATCACACGTTCACCAACAGAATGCAGCTGATGAGCCACAATATCGCTCACAGCACGGAGAACATAGACATGTCCTGCGACAACGAGAACATAGACATCTGCGAAAACTCGAATCAGATCCCACAGAATTTGAGCTACGGAAGGTCCATCGACTCTGTCGAGAATTCCGTGGAGAATTCCATTCAGAACTTGTCGTACGGTAAGTCCGGAACGAACGGAACCGTGCAACCGCACAGCGTCGGCTTTCCCGATAACATGGACCTGGAAGAGATTCACGGGTCGAACGGGAGTTCCGAGCGACTCGAAAATACGCCGATGCACCACCCGGGGGACGACATGCTCGACGCCCGTGCGTTGAGGTTCGACAAAGAGCTCGAGCGTACCGACAACAAGGAAAACCTCGGTGGTTACGAGATGTGCCCGAGCAATTTGAATTACGCGTCGAAGGAGCACGTCGAACAAGAAAATTCGGCGAGCACGGAGACAAAAAGATACAAGTGCGAGGCGTGTTCAAAACTGTTCTCTCAAAGATCGAAACTGGTGGCCCACCGGCTGTCGCACTCCGGCCAGCAGCCCTTCAAGTGTCAGAGCTGCGACAAGGCTTACTCGAGCAAAAGCAAGTTGAACGCTCACGTCCGGCTGCACACGAAAACGAACGTGCACAAATGCAAGATGTGCGAGAAAATCTTCGCGTATCCCTCTTATCTGCGGGACCACTTGAAAAGCCACGAGCAGtcgagtcacttgaagaaccacgAGGCCTCGCACGCTTCTCTGAGGCAGCATCAGTGTCGGTTGTGCGGGAAACGGTTCAAACTGATCAACCATTTGAAAAGGCACTTGACTCTGCACAACGGTGCCAAAACGTACAAATGCCATCGTTGCAATCAGATGTTCTCGCAAGCGTTTAGCCTGACGAGACACTTGAAGAGGCACGAGTCGCACGAGTCGCACGCGTAA
Protein Sequence: MFIVTKEIDSENIGKLCRTCLREDGDKMICLFVGPAGSSLAAKLRSLSCLDVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAAVKVSGLSAYATVPGCKLYQQNQSFQPVPVPVPVPVPVQVQNTHKTLKCIECGIPCATYQELCAHGRSHLPLMQENMPAQRVRIAESQNPYLNFNFSHFSSNLSGETLPNPPLSPLIRSNMLPQMIPMNAENSSRAACALHCSLCNHTFTNRMQLMSHNIAHSTENIDMSCDNENIDICENSNQIPQNLSYGRSIDSVENSVENSIQNLSYGKSGTNGTVQPHSVGFPDNMDLEEIHGSNGSSERLENTPMHHPGDDMLDARALRFDKELERTDNKENLGGYEMCPSNLNYASKEHVEQENSASTETKRYKCEACSKLFSQRSKLVAHRLSHSGQQPFKCQSCDKAYSSKSKLNAHVRLHTKTNVHKCKMCEKIFAYPSYLRDHLKSHEQSSHLKNHEASHASLRQHQCRLCGKRFKLINHLKRHLTLHNGAKTYKCHRCNQMFSQAFSLTRHLKRHESHESHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00863514;
90% Identity: -
80% Identity: -