Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052217.1:10635456-10637564[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0034 0.24 12.0 0.6 1 23 271 294 271 294 0.96

2 9 6.9e-06 0.00049 20.4 0.5 1 23 300 322 300 322 0.99

3 9 9.1e-07 6.4e-05 23.2 0.6 1 23 328 350 328 350 0.99

4 9 0.043 3 8.5 0.7 1 23 356 378 356 378 0.98

5 9 2.9e-06 0.00021 21.6 0.2 1 20 384 403 384 404 0.96

6 9 0.033 2.3 8.8 2.4 1 23 413 433 413 433 0.94

7 9 1.4e-06 0.0001 22.6 0.5 3 23 441 461 440 461 0.98

8 9 0.00014 0.01 16.3 1.4 1 23 467 489 467 489 0.98

9 9 0.0028 0.2 12.2 2.6 1 21 495 515 495 518 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0034	0.24	12.0	0.6	1	23	271	294	271	294	0.96
2	9	6.9e-06	0.00049	20.4	0.5	1	23	300	322	300	322	0.99
3	9	9.1e-07	6.4e-05	23.2	0.6	1	23	328	350	328	350	0.99
4	9	0.043	3	8.5	0.7	1	23	356	378	356	378	0.98
5	9	2.9e-06	0.00021	21.6	0.2	1	20	384	403	384	404	0.96
6	9	0.033	2.3	8.8	2.4	1	23	413	433	413	433	0.94
7	9	1.4e-06	0.0001	22.6	0.5	3	23	441	461	440	461	0.98
8	9	0.00014	0.01	16.3	1.4	1	23	467	489	467	489	0.98
9	9	0.0028	0.2	12.2	2.6	1	21	495	515	495	518	0.96

Sequence Information

Coding Sequence: ATGCAGGAGAACGTGTCGTCGATCCGAGCCAGCGGACCCGGACCCGGGCCGGTGCAGGAGGAGGTTCAATTGACGGAGCTATTGCCGGTGAAGCAATCGCGGATCAGGCGCAACGGCGAAGGCGATGACGACGGCTGTGGCGGCGGTGATAAGGCTGACGCGAAGAAGGACGGAGGTGGCGTCCACTCGAACGGGACCACGGACGCGTTGAAGGTGCTGCGGAGCTTCGAGGAGAGCGAGCAACAGTTCCACGCGCGGCACAGCTTCCTGGAAAAGACGGACCATCGACGGAAGCAGTCCGCGCAGAGGAGGAGGCACGTCGCGAAGGTCCCGGGCGGTGCGTCGAAGAGGCAGGAGAAGTCATTTGTGTTCTCGGTGTACGGCCAGGAGGAGGAGGACGCCTATCCGGCCGGCTTCGAGCAGAGTAAAGACCTCGACGAGGAGATCTACGCGTTCCGGCGCGACGCTCGCGTCTACTCGCCGGGGACCGACGGCTCGTTGTTCGAGCACGGCTGCGAGCCCGACGGGAAGGCTTCGGGCTTCAACATCGAGGCAATCATCGCGGCGAACTACTTCCTCGAGAGCGAGAACAACAACGTGCTGCGGCCCGGCCCGGGCGATAAGGTGCGCCGCGCCGAGAGCTCGTCGTTGGCGTCTTCGCCGGGCAAGAACGAGTACGAGGACGAGGACGACAGCAGTGTGGATCATGGACGAGGAGAGGATGCGAACGACGACGACAACGAAGACGGAGGGAAGGCGGAGAAGAGAAGAGAGAAAACGGCGATCGCGGCCGGAAACGAGGAGAAGAAGTACTGTTGCGTGGTGTGCGAGGCGCGGTTCAAGGGCAGCGGCGGGCTACGGAACCATTACAAGATCGTGCACGGCACCGGGCCGATATTTAAATGCGACGAGTGCGGCAAGGAGTTCCCGCTTAAGGAGCGGCTGAAGCTCCACGTGAGAACGCACACCGGCTTCAAGCCGTACAAATGCTCCGAGTGCGACAAGAGTTTCGCGAGGGGCGGCCAGCTGGTGCAGCATCGGCGAAGTCACAGCCAGGTAAAGCCGTACCGTTGCGGCCTGTGCTCGGGGACGTTCACCTGCGCGGCGAACCTGGCGCTCCACGTGAAACGCCACAACGGCCAGAAGGACCACAAGTGCGAGATCTGCGGGCGGGCGTTCGTGCGCCGGGACGCGCTCAAAAAACACCTGGAGTGCCTCCATCGGGACGTCAAGTCGTTCCTCTGCGTGATCTGCAACAAAACGTTCAAGGGTCATCTGCCGCAGCACATGAGGACGCACGCGCGCGACCGGCCCCACGGATGCGCCACCTGCGGCCAGAGGTTCGCACAAAAGTCTCAGCTGACCGTACACCAGCGCACCCACTCCGGCCAGAGGCCATTCAGGTGTCTGGTTTGCTGGCAGGCGTTCGCCCACTCGACCGCCCTCAAGCTCCACACCAGAAGGCACACCGGCGAGAGACCGTTCAAGTGCGCCGAGTGCAACGCCGGCTTCACTCAGCTGCCACACTGGAAAAAGCACATGAAGTGCATCCACGGACGGACCGAGCCGTACGCCTGCAAACGCTGCAAGAGTTTCTTTCGGATCAAGAACGACCTCGAGTTCCACGAGAAGACTTGCCATCCCGAGCTAGTCTCCAGCAACGCGACCACCACCACCGCCGCCGCCAACAACAACACCAGCTCAACCAATCCCGGAAATACCGATGCGCTCTTTCGCGAAATCGTCGAGAAACCTCCACTGCCGACGCCGCCGACGCCCACTGCAGCCGCACCGACGCCCTCCAAGTACAGAACCATGTCCGTCGAGAGGATGAGATTGCTCCTCGCGGTTCTGCTCAAGAGGATCAGCAAGCAGGAGAGGCTGGACGAACTAGGGTTCGGCAAACGGTTGATCGACGAGGTCCTCCGGGACTCCTTGCTCTCCGCCGGCAAGGACCCGGTGCCGCGCGACGGCCTCACCGAACTCGAGACCCTCACCAGAAACCTCGAGATATTCCTCAAGTGGACCGTGCCCAAGGAACACTGGGAGAACTTTCGCAAGCACAACAAATCCCCCGAGGACATCTTGGAGACGCTTACCGCCACCTAA
Protein Sequence: MQENVSSIRASGPGPGPVQEEVQLTELLPVKQSRIRRNGEGDDDGCGGGDKADAKKDGGGVHSNGTTDALKVLRSFEESEQQFHARHSFLEKTDHRRKQSAQRRRHVAKVPGGASKRQEKSFVFSVYGQEEEDAYPAGFEQSKDLDEEIYAFRRDARVYSPGTDGSLFEHGCEPDGKASGFNIEAIIAANYFLESENNNVLRPGPGDKVRRAESSSLASSPGKNEYEDEDDSSVDHGRGEDANDDDNEDGGKAEKRREKTAIAAGNEEKKYCCVVCEARFKGSGGLRNHYKIVHGTGPIFKCDECGKEFPLKERLKLHVRTHTGFKPYKCSECDKSFARGGQLVQHRRSHSQVKPYRCGLCSGTFTCAANLALHVKRHNGQKDHKCEICGRAFVRRDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRTEPYACKRCKSFFRIKNDLEFHEKTCHPELVSSNATTTTAAANNNTSSTNPGNTDALFREIVEKPPLPTPPTPTAAAPTPSKYRTMSVERMRLLLAVLLKRISKQERLDELGFGKRLIDEVLRDSLLSAGKDPVPRDGLTELETLTRNLEIFLKWTVPKEHWENFRKHNKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -